Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 271 1e-67 seq1 226 5e-54 >seq2 Length=21544594 Score = 271 bits (300), Expect = 1e-67 Identities = 559/824 (68%), Gaps = 13/824 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||| |||| | || || || ||||| ||||| || |||| ||| || |||| Sbjct 8575031 CTGGTACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTC 8575090 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| || ||||| ||||| || | | | | ||||| || | |||| Sbjct 8575091 CATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAA 8575150 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | ||||| ||| |||| ||||| | ||||| ||| | ||||||||| || | Sbjct 8575151 ACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATT 8575210 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||||| || | ||||| ||||||| ||| || ||| || || | | |||| Sbjct 8575211 GACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTC 8575270 Query 48079 CTTAACGCGGGACTCTGAG---GGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCA-G 48133 | | ||| ||| | | || | | ||| | ||||||| | | | || ||| | Sbjct 8575271 GATGATGCG---CTC-GCGCTTGGGTCGCTGCACCAGGTGCTGGA---ACATCA-GCACG 8575322 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| | ||||||||| ||||| || ||| ||| ||||||||||| | ||| Sbjct 8575323 GCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCA 8575382 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || || ||||||||||| | ||||| ||| |||||||||| Sbjct 8575383 GGCATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATG 8575442 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 |||||||| || || || ||| ||| | ||| |||||| ||| |||| |||||| Sbjct 8575443 CCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTAGCCGACTTGGACGAGATC 8575502 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 ||||| || |||||||||||||| ||| | |||||||| || || || ||| Sbjct 8575503 CAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAAC 8575562 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 || | || | || || ||| | || || || || ||||||||| Sbjct 8575563 AGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCC 8575622 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 |||||||| ||||| || ||||||||||| ||||||||| | ||||| | |||| Sbjct 8575623 GAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGC 8575682 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || ||||| ||||| ||| ||||| || || || ||||| || || |||||| Sbjct 8575683 ACCTCCTGACTGAATCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCAAAG 8575742 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 ||||| || || || | |||||||||||||| || | || | |||| | Sbjct 8575743 AAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTA 8575802 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||| ||| || ||||| || || || |||||||| || || Sbjct 8575803 AGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGC 8575846 Score = 89.7 bits (98), Expect = 1e-12 Identities = 155/224 (69%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 241401 GGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACG 241460 |||| |||||| || |||||||| || ||||| ||||| |||||| || Sbjct 6761410 GGCA-ATGTGCTCCATCACCTCCTGCTTCAGTTGCGCCACATGGTCCTTGAGGTTCTTTA 6761352 Query 241461 CGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCG 241520 || | | | ||| | |||| || |||||| ||||| || ||||||||| | Sbjct 6761351 CGATGCTAGCCAGGTCGACGTTCTCGCCCTTGAGTACCTTTACGCGATCCTCCAGCTTTG 6761292 Query 241521 CGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCT 241580 |||||||||||| |||||| |||||| |||| || |||| ||||| || | |||| Sbjct 6761291 AGATGCGTTCCAGCTTGCGCTTGCGGCACTTGGATGCAGCCACACGGTTACGCTGCCTCT 6761232 Query 241581 TACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 | || ||| |||||| ||||| |||||||| |||||| Sbjct 6761231 TGCGCTCCAGCTTGATCTTCTCCTGCGTTTCCATGTCAATCGGA 6761188 >seq1 Length=23539531 Score = 226 bits (250), Expect = 5e-54 Identities = 976/1527 (64%), Gaps = 66/1527 (4%) Strand=Plus/Plus Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 ||| ||||||| | |||||| || || || || || | || ||| | ||| | ||| Sbjct 10003739 TGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTG 10003798 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 || ||||||| | || ||||| |||| ||||| || || || |||||||||||| Sbjct 10003799 TACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGA 10003858 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCG--AAGCTCTGCCC 213081 || || || || ||||| || ||||||| ||| | | || || |||||| Sbjct 10003859 GCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATG-GACTCCTTCAATTTCTGCC- 10003916 Query 213082 AGTCCCATCTGCCAGACAGGTCCTCGT-----CCTTCACGTTCCACATGTCAAACTGCAA 213136 ||||||| ||||| |||| |||| || ||||||||| ||||||| Sbjct 10003917 AGTCCCA---------CAGGT--TCGTTGGCACCTT---GTCCCACATGTCGTACTGCAA 10003962 Query 213137 GATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAG 213196 || ||||||||||| |||||||||| ||| | ||| || || | || |||||| Sbjct 10003963 AATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAG 10004022 Query 213197 CTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGA---- 213252 |||||| || | || ||| | ||||| || ||||||||||||| | || | Sbjct 10004023 TTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAG 10004082 Query 213253 ----GCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCC 213308 ||||||| || | | ||| ||| |||| | || || ||||||| Sbjct 10004083 ACCGGCTTCTTCGCTTTCGT--ACGGGAAACGCATGAGAATC------AAGGCATCAGCG 10004134 Query 213309 AGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCC 213368 | ||||| | || ||||| | ||| | || |||| || ||||| ||| | Sbjct 10004135 AATCCCTGAATACCAATGCCCACGGGACGATGCCTCAAATTGGACTTCCTTGCCTCTGGC 10004194 Query 213369 AAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACA 213428 | || ||| | ||| || || |||||||| || || ||| | | || ||||| Sbjct 10004195 AGCGGATAATAATTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACT 10004254 Query 213429 TGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCG 213488 | || | || | || | |||| | ||| | || || ||| |||||| Sbjct 10004255 TCCTTGAGCTTCTTGAAATC--ATACGTCTTCTCCGGCGTG-ACGAACATGTTGAGGGCG 10004311 Query 213489 ATGCTGGCCAGGTTGCAAACGGCCACCTCCT---GAGAGTCTGTGTACTCCATGATCTCG 213545 ||| ||||| |||||| || || | ||| | | ||| | || || | ||| || Sbjct 10004312 ATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAG---GAATATTCAACGATTTCC 10004368 Query 213546 GTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA 213605 ||||||| ||||||||| |||||||| | ||||| ||||| ||| |||| | Sbjct 10004369 GTGCACAAGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAA 10004428 Query 213606 GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT- 213664 | |||||| |||||||||| || |||||||| | || | | | | || ||| Sbjct 10004429 GCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGAT--GGCAA 10004486 Query 213665 -CCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGT 213722 ||| ||| | ||||| ||| || || | ||| | | |||||| | Sbjct 10004487 ACCACAGGGATTGAGCCTTAACCGTTCGGTTGGC----CCGACCCTCTTGCTCGTATTTC 10004542 Query 213723 TCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGA 213782 ||||| |||| | |||||| | |||||| || || || || ||||| ||| Sbjct 10004543 TCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGG 10004602 Query 213783 CACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCAC 213842 |||||||| ||| || |||| | || | | |||||| || || || | |||| Sbjct 10004603 CACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCAC 10004662 Query 213843 AGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCT 213902 || ||| ||||| || | | | |||| || || | ||| || ||| || Sbjct 10004663 AGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCC 10004722 Query 213903 AGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTC 213962 || || ||||||| |||| |||||| || |||| || ||||||||||| || || | | Sbjct 10004723 AGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACCGGGGCGC 10004782 Query 213963 TTGCCG---CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACC 214019 |||||| ||||| ||||| | ||||| | || |||| | ||| | ||| ||| Sbjct 10004783 TTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTAAAGACCCTCAGCATGGGAACC 10004842 Query 214020 AGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTC 214079 | ||| ||||| || || || || || | | ||| || | | | | Sbjct 10004843 AACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATGCAATGC 10004902 Query 214080 ATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCC 214139 | | ||| || |||||||||||| ||||||||||||||||||| | ||||| || Sbjct 10004903 ACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGACTTG 10004962 Query 214140 ATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGC 214199 | ||||| | ||| ||| | || | | |||| | ||| || ||| | ||| ||| Sbjct 10004963 AAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAAGGAAACACGACGACAACTGCGGC 10005022 Query 214200 CTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGG 214259 | | | | ||| | || || ||||| ||||| | | | | || || Sbjct 10005023 CGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGTGTGAAGTAGCGCTCCGACAGA 10005082 Query 214260 AGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CT 214318 || | ||||| |||| | ||| ||| || | ||||| | || ||| | Sbjct 10005083 AGATTATAGGTTTCCACGGCTGCATCGATATCCTCTCCATGGATTCCGATCGC-CACGCG 10005141 Query 214319 CATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTT--GGGGCCCTTGAGCAGGTAGGAG 214376 ||||||||| ||||| || || || || | |||| | | ||||||||| ||||| Sbjct 10005142 CATCAGCATATGCTGCGG--TCGCTCTGCGATCTTTCCGTTTCTCTTGAGCAGATAGGAA 10005199 Query 214377 CGCTCCAGAGTCTTGAACCCAAAGTAG 214403 |||||||| |||||||| ||||| ||| Sbjct 10005200 CGCTCCAGGGTCTTGAAGCCAAAATAG 10005226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931444083144960