Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq2 271 1e-67
seq1 226 5e-54
>seq2
Length=21544594
Score = 271 bits (300), Expect = 1e-67
Identities = 559/824 (68%), Gaps = 13/824 (2%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| ||| |||| | || || || ||||| ||||| || |||| ||| || ||||
Sbjct 8575031 CTGGTACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTC 8575090
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958
||||||| || ||||| ||||| || | | | | ||||| || | ||||
Sbjct 8575091 CATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAA 8575150
Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018
| ||||| ||| |||| ||||| | ||||| ||| | ||||||||| || |
Sbjct 8575151 ACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATT 8575210
Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078
||||||| || | ||||| ||||||| ||| || ||| || || | | ||||
Sbjct 8575211 GACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTC 8575270
Query 48079 CTTAACGCGGGACTCTGAG---GGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCA-G 48133
| | ||| ||| | | || | | ||| | ||||||| | | | || ||| |
Sbjct 8575271 GATGATGCG---CTC-GCGCTTGGGTCGCTGCACCAGGTGCTGGA---ACATCA-GCACG 8575322
Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193
|||||||| | ||||||||| ||||| || ||| ||| ||||||||||| | |||
Sbjct 8575323 GCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCA 8575382
Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253
||||| | || | || || ||||||||||| | ||||| ||| ||||||||||
Sbjct 8575383 GGCATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATG 8575442
Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313
|||||||| || || || ||| ||| | ||| |||||| ||| |||| ||||||
Sbjct 8575443 CCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTAGCCGACTTGGACGAGATC 8575502
Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373
||||| || |||||||||||||| ||| | |||||||| || || || |||
Sbjct 8575503 CAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAAC 8575562
Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433
|| | || | || || ||| | || || || || |||||||||
Sbjct 8575563 AGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCC 8575622
Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493
|||||||| ||||| || ||||||||||| ||||||||| | ||||| | ||||
Sbjct 8575623 GAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGC 8575682
Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553
|| || ||||| ||||| ||| ||||| || || || ||||| || || ||||||
Sbjct 8575683 ACCTCCTGACTGAATCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCAAAG 8575742
Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613
||||| || || || | |||||||||||||| || | || | |||| |
Sbjct 8575743 AAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTA 8575802
Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657
| ||| ||| || ||||| || || || |||||||| || ||
Sbjct 8575803 AGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGC 8575846
Score = 89.7 bits (98), Expect = 1e-12
Identities = 155/224 (69%), Gaps = 1/224 (0%)
Strand=Plus/Minus
Query 241401 GGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACG 241460
|||| |||||| || |||||||| || ||||| ||||| |||||| ||
Sbjct 6761410 GGCA-ATGTGCTCCATCACCTCCTGCTTCAGTTGCGCCACATGGTCCTTGAGGTTCTTTA 6761352
Query 241461 CGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCG 241520
|| | | | ||| | |||| || |||||| ||||| || ||||||||| |
Sbjct 6761351 CGATGCTAGCCAGGTCGACGTTCTCGCCCTTGAGTACCTTTACGCGATCCTCCAGCTTTG 6761292
Query 241521 CGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCT 241580
|||||||||||| |||||| |||||| |||| || |||| ||||| || | ||||
Sbjct 6761291 AGATGCGTTCCAGCTTGCGCTTGCGGCACTTGGATGCAGCCACACGGTTACGCTGCCTCT 6761232
Query 241581 TACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
| || ||| |||||| ||||| |||||||| ||||||
Sbjct 6761231 TGCGCTCCAGCTTGATCTTCTCCTGCGTTTCCATGTCAATCGGA 6761188
>seq1
Length=23539531
Score = 226 bits (250), Expect = 5e-54
Identities = 976/1527 (64%), Gaps = 66/1527 (4%)
Strand=Plus/Plus
Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963
||| ||||||| | |||||| || || || || || | || ||| | ||| | |||
Sbjct 10003739 TGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTG 10003798
Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023
|| ||||||| | || ||||| |||| ||||| || || || ||||||||||||
Sbjct 10003799 TACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGA 10003858
Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCG--AAGCTCTGCCC 213081
|| || || || ||||| || ||||||| ||| | | || || ||||||
Sbjct 10003859 GCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATG-GACTCCTTCAATTTCTGCC- 10003916
Query 213082 AGTCCCATCTGCCAGACAGGTCCTCGT-----CCTTCACGTTCCACATGTCAAACTGCAA 213136
||||||| ||||| |||| |||| || ||||||||| |||||||
Sbjct 10003917 AGTCCCA---------CAGGT--TCGTTGGCACCTT---GTCCCACATGTCGTACTGCAA 10003962
Query 213137 GATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAG 213196
|| ||||||||||| |||||||||| ||| | ||| || || | || ||||||
Sbjct 10003963 AATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAG 10004022
Query 213197 CTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGA---- 213252
|||||| || | || ||| | ||||| || ||||||||||||| | || |
Sbjct 10004023 TTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAG 10004082
Query 213253 ----GCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCC 213308
||||||| || | | ||| ||| |||| | || || |||||||
Sbjct 10004083 ACCGGCTTCTTCGCTTTCGT--ACGGGAAACGCATGAGAATC------AAGGCATCAGCG 10004134
Query 213309 AGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCC 213368
| ||||| | || ||||| | ||| | || |||| || ||||| ||| |
Sbjct 10004135 AATCCCTGAATACCAATGCCCACGGGACGATGCCTCAAATTGGACTTCCTTGCCTCTGGC 10004194
Query 213369 AAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACA 213428
| || ||| | ||| || || |||||||| || || ||| | | || |||||
Sbjct 10004195 AGCGGATAATAATTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACT 10004254
Query 213429 TGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCG 213488
| || | || | || | |||| | ||| | || || ||| ||||||
Sbjct 10004255 TCCTTGAGCTTCTTGAAATC--ATACGTCTTCTCCGGCGTG-ACGAACATGTTGAGGGCG 10004311
Query 213489 ATGCTGGCCAGGTTGCAAACGGCCACCTCCT---GAGAGTCTGTGTACTCCATGATCTCG 213545
||| ||||| |||||| || || | ||| | | ||| | || || | ||| ||
Sbjct 10004312 ATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAG---GAATATTCAACGATTTCC 10004368
Query 213546 GTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA 213605
||||||| ||||||||| |||||||| | ||||| ||||| ||| |||| |
Sbjct 10004369 GTGCACAAGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAA 10004428
Query 213606 GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT- 213664
| |||||| |||||||||| || |||||||| | || | | | | || |||
Sbjct 10004429 GCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGAT--GGCAA 10004486
Query 213665 -CCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGT 213722
||| ||| | ||||| ||| || || | ||| | | |||||| |
Sbjct 10004487 ACCACAGGGATTGAGCCTTAACCGTTCGGTTGGC----CCGACCCTCTTGCTCGTATTTC 10004542
Query 213723 TCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGA 213782
||||| |||| | |||||| | |||||| || || || || ||||| |||
Sbjct 10004543 TCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGG 10004602
Query 213783 CACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCAC 213842
|||||||| ||| || |||| | || | | |||||| || || || | ||||
Sbjct 10004603 CACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCAC 10004662
Query 213843 AGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCT 213902
|| ||| ||||| || | | | |||| || || | ||| || ||| ||
Sbjct 10004663 AGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCC 10004722
Query 213903 AGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTC 213962
|| || ||||||| |||| |||||| || |||| || ||||||||||| || || | |
Sbjct 10004723 AGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACCGGGGCGC 10004782
Query 213963 TTGCCG---CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACC 214019
|||||| ||||| ||||| | ||||| | || |||| | ||| | ||| |||
Sbjct 10004783 TTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTAAAGACCCTCAGCATGGGAACC 10004842
Query 214020 AGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTC 214079
| ||| ||||| || || || || || | | ||| || | | | |
Sbjct 10004843 AACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATGCAATGC 10004902
Query 214080 ATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCC 214139
| | ||| || |||||||||||| ||||||||||||||||||| | ||||| ||
Sbjct 10004903 ACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGACTTG 10004962
Query 214140 ATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGC 214199
| ||||| | ||| ||| | || | | |||| | ||| || ||| | ||| |||
Sbjct 10004963 AAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAAGGAAACACGACGACAACTGCGGC 10005022
Query 214200 CTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGG 214259
| | | | ||| | || || ||||| ||||| | | | | || ||
Sbjct 10005023 CGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGTGTGAAGTAGCGCTCCGACAGA 10005082
Query 214260 AGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CT 214318
|| | ||||| |||| | ||| ||| || | ||||| | || ||| |
Sbjct 10005083 AGATTATAGGTTTCCACGGCTGCATCGATATCCTCTCCATGGATTCCGATCGC-CACGCG 10005141
Query 214319 CATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTT--GGGGCCCTTGAGCAGGTAGGAG 214376
||||||||| ||||| || || || || | |||| | | ||||||||| |||||
Sbjct 10005142 CATCAGCATATGCTGCGG--TCGCTCTGCGATCTTTCCGTTTCTCTTGAGCAGATAGGAA 10005199
Query 214377 CGCTCCAGAGTCTTGAACCCAAAGTAG 214403
|||||||| |||||||| ||||| |||
Sbjct 10005200 CGCTCCAGGGTCTTGAAGCCAAAATAG 10005226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931444083144960
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