Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq2 174 3e-38
seq1 141 2e-28
>seq2
Length=21544594
Score = 174 bits (192), Expect = 3e-38
Identities = 523/808 (65%), Gaps = 14/808 (2%)
Strand=Plus/Minus
Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571
|||||||| ||| ||| | ||| || |||||||| | | |||| || || |
Sbjct 8575838 CTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGGCACCGCCTGAAGGA 8575779
Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631
||||||| ||||| || | ||||| |||| |||||||| ||||||||||| || ||
Sbjct 8575778 CGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCCTCTGATGGCATCGT 8575719
Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691
|||||||| ||| ||| |||||| ||| |||||| | |||||| || ||
Sbjct 8575718 AAACGAGAACCTGGTGGAGCGATTCAGTCAGGAGGTGCAGATCACGGAGGCACGATGCTT 8575659
Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751
|||||| |||||||| ||||| || || |||||||| ||| |||| || || ||||
Sbjct 8575658 CTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTA---CAGTGTTTTGAT 8575602
Query 25752 ---GACGTACATTACAGA-CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACA 25807
|| ||||| || | | || || |||| ||||| || ||||| |
Sbjct 8575601 CGACACTTACATCCGGGATCCACACC-AGCGAGAGTACCTGTTCAACGCTATCGAAACGA 8575543
Query 25808 TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTA 25867
| || | ||| | ||||| |||||| || |||||| | || ||||
Sbjct 8575542 TGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTCGTCCAAGTCGGCTA 8575483
Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927
|| || ||||| | | |||||||| || |||||||||||||| |||||||| |
Sbjct 8575482 ATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCT 8575423
Query 25928 TTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987
| || |||| |||||||| ||| || || ||||| || || ||| |||||||
Sbjct 8575422 TCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTCCAACG 8575363
Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCC 26047
|||| ||| | |||||||| | ||| | || |||||| ||| | | | | |
Sbjct 8575362 AGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGTTCCAG---C 8575306
Query 26048 ACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGA 26107
|| || | || ||| | ||| | || | |||||| || || |||| |
Sbjct 8575305 ACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGAGATCATCCGCGACGCGGTGGCCA 8575246
Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167
| ||| ||||||| | | ||||||||| | |
Sbjct 8575245 TTGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTCAATTTGATCGGCATGAACTGCGACC 8575186
Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCC 26226
| ||| ||| |||||||||| || || |||| | |||| ||| || |||| | |
Sbjct 8575185 TGATGTCCCAGTACATTGAGTTCGTAGCGGACCGTTTGCTCGTG-GAGTTGGGCGTTGGA 8575127
Query 26227 AGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAG 26286
| |||||| || ||||| || |||| ||||| | |||||| |||| || |||
Sbjct 8575126 AAGATCTACAACACCAAAAACCCATTTAACTTCATGGAGATGATATCGCTGGATGGAAAG 8575067
Query 26287 ACCAACTTCTTTGAAAAGAGGGTCGGCG 26314
|||||||| || ||||||| ||| ||||
Sbjct 8575066 ACCAACTTTTTCGAAAAGAAGGT-GGCG 8575040
>seq1
Length=23539531
Score = 141 bits (156), Expect = 2e-28
Identities = 520/811 (64%), Gaps = 15/811 (2%)
Strand=Plus/Plus
Query 221698 GTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTAT 221757
||| ||||| | | ||||| ||| || || || | ||| ||| || ||| | |
Sbjct 10004302 GTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAAC 10004361
Query 221758 GATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCG 221817
||| || || || | |||||||||||| ||||| || | | | || || ||| |
Sbjct 10004362 GATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCT 10004421
Query 221818 ATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAAT 221877
||| |||||||||| ||||||| | ||| || ||||||| || ||| | |||
Sbjct 10004422 GTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTC---AAT 10004478
Query 221878 CTTGTC---CCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTC 221934
|| | ||| || | || | ||||| | ||| | |||||| || |
Sbjct 10004479 GATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTA 10004538
Query 221935 ATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT 221994
| | || || ||| | || || | || || || | |||| || ||||||||| |
Sbjct 10004539 TTTCTCG---TACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTT 10004595
Query 221995 GGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGG 222054
| ||| ||||| || ||| | |||| | | || | | ||||||||| || ||
Sbjct 10004596 GTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGG 10004655
Query 222055 GATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCT 222114
|||||||| || | ||| ||||| | | || | ||| || ||| |||| ||| |
Sbjct 10004656 TATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTT 10004715
Query 222115 CAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCC 222174
||| |||| |||||||| | || | |||||| || |||||||| | ||| | || ||
Sbjct 10004716 CAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACC 10004775
Query 222175 GGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGT 222234
||| |||||| ||| ||||||||||| | ||| | || |||| | || |
Sbjct 10004776 GGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTAAAGACCCTCAGCAT 10004835
Query 222235 CGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAG 222294
|| |||| || ||||| ||| || ||||| ||| | | || || | |
Sbjct 10004836 GGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAAT 10004895
Query 222295 GTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354
| | | | ||||| ||||||||| || |||||||||||||| | |
Sbjct 10004896 GCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCAC 10004955
Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACAT 222414
|| | | |||||||| || ||||| || | | | |||| || ||||| |||||||
Sbjct 10004956 AGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAAGGAAACACGACGACAA 10005015
Query 222415 CTGAG---ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCC 222471
||| | || |||| | ||| |||||| ||||| || ||||| |||||||
Sbjct 10005016 CTGCGGCCGGTTTGTGGCA---GCGGCAAACAGTGTGGGCGATGCATGTGTGAAGTAGCG 10005072
Query 222472 CCTAGACATCAGATCGTACGTCTCTACGACT 222502
| |||| |||| || || || ||| ||
Sbjct 10005073 CTCCGACAGAAGATTATAGGTTTCCACGGCT 10005103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928756339143360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |