Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 174 3e-38 seq1 141 2e-28 >seq2 Length=21544594 Score = 174 bits (192), Expect = 3e-38 Identities = 523/808 (65%), Gaps = 14/808 (2%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||||| ||| ||| | ||| || |||||||| | | |||| || || | Sbjct 8575838 CTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGGCACCGCCTGAAGGA 8575779 Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631 ||||||| ||||| || | ||||| |||| |||||||| ||||||||||| || || Sbjct 8575778 CGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCCTCTGATGGCATCGT 8575719 Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691 |||||||| ||| ||| |||||| ||| |||||| | |||||| || || Sbjct 8575718 AAACGAGAACCTGGTGGAGCGATTCAGTCAGGAGGTGCAGATCACGGAGGCACGATGCTT 8575659 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||||| |||||||| ||||| || || |||||||| ||| |||| || || |||| Sbjct 8575658 CTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTA---CAGTGTTTTGAT 8575602 Query 25752 ---GACGTACATTACAGA-CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACA 25807 || ||||| || | | || || |||| ||||| || ||||| | Sbjct 8575601 CGACACTTACATCCGGGATCCACACC-AGCGAGAGTACCTGTTCAACGCTATCGAAACGA 8575543 Query 25808 TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTA 25867 | || | ||| | ||||| |||||| || |||||| | || |||| Sbjct 8575542 TGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTCGTCCAAGTCGGCTA 8575483 Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 || || ||||| | | |||||||| || |||||||||||||| |||||||| | Sbjct 8575482 ATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCT 8575423 Query 25928 TTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 | || |||| |||||||| ||| || || ||||| || || ||| ||||||| Sbjct 8575422 TCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTCCAACG 8575363 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCC 26047 |||| ||| | |||||||| | ||| | || |||||| ||| | | | | | Sbjct 8575362 AGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGTTCCAG---C 8575306 Query 26048 ACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGA 26107 || || | || ||| | ||| | || | |||||| || || |||| | Sbjct 8575305 ACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGAGATCATCCGCGACGCGGTGGCCA 8575246 Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167 | ||| ||||||| | | ||||||||| | | Sbjct 8575245 TTGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTCAATTTGATCGGCATGAACTGCGACC 8575186 Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCC 26226 | ||| ||| |||||||||| || || |||| | |||| ||| || |||| | | Sbjct 8575185 TGATGTCCCAGTACATTGAGTTCGTAGCGGACCGTTTGCTCGTG-GAGTTGGGCGTTGGA 8575127 Query 26227 AGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAG 26286 | |||||| || ||||| || |||| ||||| | |||||| |||| || ||| Sbjct 8575126 AAGATCTACAACACCAAAAACCCATTTAACTTCATGGAGATGATATCGCTGGATGGAAAG 8575067 Query 26287 ACCAACTTCTTTGAAAAGAGGGTCGGCG 26314 |||||||| || ||||||| ||| |||| Sbjct 8575066 ACCAACTTTTTCGAAAAGAAGGT-GGCG 8575040 >seq1 Length=23539531 Score = 141 bits (156), Expect = 2e-28 Identities = 520/811 (64%), Gaps = 15/811 (2%) Strand=Plus/Plus Query 221698 GTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTAT 221757 ||| ||||| | | ||||| ||| || || || | ||| ||| || ||| | | Sbjct 10004302 GTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAAC 10004361 Query 221758 GATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCG 221817 ||| || || || | |||||||||||| ||||| || | | | || || ||| | Sbjct 10004362 GATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCT 10004421 Query 221818 ATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAAT 221877 ||| |||||||||| ||||||| | ||| || ||||||| || ||| | ||| Sbjct 10004422 GTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTC---AAT 10004478 Query 221878 CTTGTC---CCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTC 221934 || | ||| || | || | ||||| | ||| | |||||| || | Sbjct 10004479 GATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTA 10004538 Query 221935 ATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT 221994 | | || || ||| | || || | || || || | |||| || ||||||||| | Sbjct 10004539 TTTCTCG---TACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTT 10004595 Query 221995 GGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGG 222054 | ||| ||||| || ||| | |||| | | || | | ||||||||| || || Sbjct 10004596 GTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGG 10004655 Query 222055 GATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCT 222114 |||||||| || | ||| ||||| | | || | ||| || ||| |||| ||| | Sbjct 10004656 TATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTT 10004715 Query 222115 CAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCC 222174 ||| |||| |||||||| | || | |||||| || |||||||| | ||| | || || Sbjct 10004716 CAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACC 10004775 Query 222175 GGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGT 222234 ||| |||||| ||| ||||||||||| | ||| | || |||| | || | Sbjct 10004776 GGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTAAAGACCCTCAGCAT 10004835 Query 222235 CGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAG 222294 || |||| || ||||| ||| || ||||| ||| | | || || | | Sbjct 10004836 GGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAAT 10004895 Query 222295 GTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354 | | | | ||||| ||||||||| || |||||||||||||| | | Sbjct 10004896 GCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCAC 10004955 Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACAT 222414 || | | |||||||| || ||||| || | | | |||| || ||||| ||||||| Sbjct 10004956 AGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAAGGAAACACGACGACAA 10005015 Query 222415 CTGAG---ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCC 222471 ||| | || |||| | ||| |||||| ||||| || ||||| ||||||| Sbjct 10005016 CTGCGGCCGGTTTGTGGCA---GCGGCAAACAGTGTGGGCGATGCATGTGTGAAGTAGCG 10005072 Query 222472 CCTAGACATCAGATCGTACGTCTCTACGACT 222502 | |||| |||| || || || ||| || Sbjct 10005073 CTCCGACAGAAGATTATAGGTTTCCACGGCT 10005103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928756339143360