Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq1 159 4e-34
>seq1
Length=23539531
Score = 159 bits (176), Expect = 4e-34
Identities = 884/1388 (64%), Gaps = 56/1388 (4%)
Strand=Plus/Minus
Query 75612 TGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGAC 75670
||||||| ||||| | ||| || | |||||||| || | | || ||| || |
Sbjct 10004756 TGGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAG-AACACGGGCAAA 10004698
Query 75671 GAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAG 75730
|||||| ||| | ||||| |||| |||||||||| || || || ||||||||
Sbjct 10004697 GAAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAA 10004638
Query 75731 CGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCC 75790
|| || |||| ||| | ||||| || | || || ||||| ||||||||| |
Sbjct 10004637 CGCGTGGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGTCCAGGTCTCCAC 10004578
Query 75791 GACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCC 75850
|| | | ||| || || || ||| || ||| || || || | |||||| | |||
Sbjct 10004577 GAAGTGTGGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGGGCC 10004518
Query 75851 AATGCGACTGTACCAGCCGCCGATG--TTTGGAAGGCTATTCTCAAATCACAGACGGAGA 75908
|| || || || | || | ||| || || | | | || |||||
Sbjct 10004517 AACCGAACGGTTAAGGCT--CAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGGAGA 10004460
Query 75909 CTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATT 75968
| |||| || || ||||| | |||||| ||||| |||| |||||| ||||| |||||
Sbjct 10004459 CCGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAATG 10004400
Query 75969 TGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATG 76028
| || || || ||| || || | ||||||||||| | || || | |||||
Sbjct 10004399 TAGGCACCATTAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATATTCCTCACCGGATG 10004340
Query 76029 AGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTC 76088
||| || || ||||| ||||| || |||||||| | || |||| ||||
Sbjct 10004339 AGATTGCAGTCTGCAACTTGGCCTCCATCGCCCTCAACATGTTCGTCACGCCGGAGA--- 10004283
Query 76089 GCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACC 76148
|| | ||||| | || || | ||| |||||||||| ||||||||||||||||||
Sbjct 10004282 AGACGTATGATTTCAAGAAGCTCAAGGAAGTCACAAAGATAGTTACCAAAAATCTAAACA 10004223
Query 76149 GAGTCATTGACAGAAATTTTTATCCCGTTG--AGACTGCGCGAAAGTCTAATATGCGACA 76206
| ||||| | |||| |||| ||| || ||| || | ||||| ||| || | ||
Sbjct 10004222 AGATAATTGATATCAATTATTAT-CCGCTGCCAGA-GGCAAGGAAGTCCAATTTGAGGCA 10004165
Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGC 76266
| || | || | ||| |||| || |||| |||| || ||| | || | | |
Sbjct 10004164 TCGTCCCGTGGGCATTGGTATTCAGGGATTCGCTGATGCCTTGATTCTCATGCGTTTCCC 10004105
Query 76267 ATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGC 76326
| || || |||||| ||||| | || |||||||| || || | |
Sbjct 10004104 GTACGAAAGCGAAGAAGCCGGTCTCTTGAATCAGCAGATATTTGAAACGATTTACTATGG 10004045
Query 76327 ATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGG 76386
|| |||| || || || ||| |||| | || ||||| | || || || | |||||
Sbjct 10004044 CGCCTTGGAAGCCAGCTGCGAACTGGCCCAGACCGAAGGTCCATACGAAACCTACGAGGG 10003985
Query 76387 TTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG--AAGGTG-AAACCAAGCT 76443
|| | | | |||| | | |||| || ||||||| |||||| ||| || ||
Sbjct 10003984 CAGCCCGGTGAGCAAAGGAATTTTGCAGTACGACATGTGGGACAAGGTGCCAACGAACCT 10003925
Query 76444 CAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 76503
| |||||| | | ||||| ||| ||| || | ||| | || ||| ||
Sbjct 10003924 ---GTGGGACTGGCAGAAATTGAAGGAGTCCATTAAGAAGCACGGTGTCCGGAACTCACT 10003868
Query 76504 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 76563
| | || || ||||| || || || || || || || |||| || ||||||| |||
Sbjct 10003867 GCTCGTTGCTCCCATGCCCACTGCATCTACAGCTCAGATAATGGGCAACAATGAATCCTT 10003808
Query 76564 TGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGT 76623
|| || ||||| || ||||| ||| | || || | || || || | ||
Sbjct 10003807 CGAGCCGTACACCACGAACATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTGGT 10003748
Query 76624 CAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTC-TCTGGTCCAAGGATATGAAGG 76682
|||| | || | | ||||| || | ||| | | ||| | | || ||||||
Sbjct 10003747 CAACCATCATTTGTTGCGCGACCT-AACCGAACTGGACTTGTGGGACGACGACATGAAGA 10003689
Query 76683 ATC---TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAG---ATATCCCAGATG 76736
| | |||| | ||| || || || |||||||| || | || ||| |||||| |
Sbjct 10003688 ACCAGATCATATCG--AGCAGG-GGATCGATTCAAAACAT-TGAGACCATACCCCAGAAG 10003633
Query 76737 ATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTC----ATTGAC 76792
| | || |||| ||| || |||||||||||| | | | ||| ||| |
Sbjct 10003632 GT-GCGAG-ATCTGTACAAGACGGTGTGGGAAATC----TCAGTCAAGTCCACGATTAAA 10003579
Query 76793 ATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGG-A 76851
|||||||| ||||||||| ||||| ||||| ||||| | || || |||
Sbjct 10003578 ATGGCCGCCGATCGTGGTGCGTTCATAGATCAGAGTCAGTCGTTCAACATACATGTGGCC 10003519
Query 76852 AAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAA 76911
|| | ||| ||| ||||| |||| || || | ||| | |||||| || || ||
Sbjct 10003518 GAGCCAAACTATG-GAAAGCTGACTTCCATACACTTTTACTCCTGGAAAGCAGGTCTTAA 10003460
Query 76912 AACCGGAATGTACTATCTCCGATCAAAG------GCGAAAGCCCGACCAATTCAGTTCAG 76965
|||||||||||||||||| || | ||| ||||| ||| ||||||||||
Sbjct 10003459 AACCGGAATGTACTATCTGCGCACCAAGCCAGCTGCGAATGCC------ATTCAGTTCA- 10003407
Query 76966 CCTTGAAC 76973
|| |||||
Sbjct 10003406 CCGTGAAC 10003399
Score = 100 bits (110), Expect = 3e-16
Identities = 200/291 (69%), Gaps = 4/291 (1%)
Strand=Plus/Minus
Query 14340 AGCGCTCTATTGCCCATATGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATG 14399
||||||| ||| | | ||| |||||| | ||||| ||| |||| || ||||
Sbjct 18945879 AGCGCTCCATTCCTAGTCTGGTGGATGGCTTGAAGCCGGGTCAGCGGAAGGTTATGTTCA 18945820
Query 14400 CTTGCTTCCATAAGAATCTCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCG 14459
|||| ||| | | |||| |||| ||| |||||||||| || || | | || || |
Sbjct 18945819 CTTGTTTCAAAAGGAATGACAAGCGTGAGGTGAAGGTGGCCCAGCTATCCGGATCAGTGG 18945760
Query 14460 CGGACAAGTCTGCGTACCACCATGGTGAAGTATCCTTAGCGGAC-ACGATTGTTAAGTTG 14518
|||| | ||| || |||||||| || || |||||| | || || || || || || ||
Sbjct 18945759 CGGAGATGTCGGCCTACCACCACGGAGAGGTATCCCT-GCAGATGACAATCGTAAATCTG 18945701
Query 14519 GCAAACGACTACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGT 14578
|| | | | |||| | |||||||| || || ||||| || | ||||||||||||
Sbjct 18945700 GCCCAGAATTTTGTGGGTGCGAACAACATAAATCTGCTTGAGCCACGCGGTCAATTTGGT 18945641
Query 14579 ACGCGTCTCATGGGTGGTAAGGATGCTTCTCAG-ACGAGGTACATTTTCAC 14628
|| || | | ||| || || ||| | | ||| | | |||||||||||
Sbjct 18945640 ACCCGCTTGACGGGAGGCAAAGATTGTGC-CAGCGCTCGTTACATTTTCAC 18945591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596512784202720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |