Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 159 4e-34 >seq1 Length=23539531 Score = 159 bits (176), Expect = 4e-34 Identities = 884/1388 (64%), Gaps = 56/1388 (4%) Strand=Plus/Minus Query 75612 TGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGAC 75670 ||||||| ||||| | ||| || | |||||||| || | | || ||| || | Sbjct 10004756 TGGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAG-AACACGGGCAAA 10004698 Query 75671 GAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAG 75730 |||||| ||| | ||||| |||| |||||||||| || || || |||||||| Sbjct 10004697 GAAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAA 10004638 Query 75731 CGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCC 75790 || || |||| ||| | ||||| || | || || ||||| ||||||||| | Sbjct 10004637 CGCGTGGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGTCCAGGTCTCCAC 10004578 Query 75791 GACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCC 75850 || | | ||| || || || ||| || ||| || || || | |||||| | ||| Sbjct 10004577 GAAGTGTGGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGGGCC 10004518 Query 75851 AATGCGACTGTACCAGCCGCCGATG--TTTGGAAGGCTATTCTCAAATCACAGACGGAGA 75908 || || || || | || | ||| || || | | | || ||||| Sbjct 10004517 AACCGAACGGTTAAGGCT--CAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGGAGA 10004460 Query 75909 CTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATT 75968 | |||| || || ||||| | |||||| ||||| |||| |||||| ||||| ||||| Sbjct 10004459 CCGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAATG 10004400 Query 75969 TGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATG 76028 | || || || ||| || || | ||||||||||| | || || | ||||| Sbjct 10004399 TAGGCACCATTAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATATTCCTCACCGGATG 10004340 Query 76029 AGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTC 76088 ||| || || ||||| ||||| || |||||||| | || |||| |||| Sbjct 10004339 AGATTGCAGTCTGCAACTTGGCCTCCATCGCCCTCAACATGTTCGTCACGCCGGAGA--- 10004283 Query 76089 GCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACC 76148 || | ||||| | || || | ||| |||||||||| |||||||||||||||||| Sbjct 10004282 AGACGTATGATTTCAAGAAGCTCAAGGAAGTCACAAAGATAGTTACCAAAAATCTAAACA 10004223 Query 76149 GAGTCATTGACAGAAATTTTTATCCCGTTG--AGACTGCGCGAAAGTCTAATATGCGACA 76206 | ||||| | |||| |||| ||| || ||| || | ||||| ||| || | || Sbjct 10004222 AGATAATTGATATCAATTATTAT-CCGCTGCCAGA-GGCAAGGAAGTCCAATTTGAGGCA 10004165 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGC 76266 | || | || | ||| |||| || |||| |||| || ||| | || | | | Sbjct 10004164 TCGTCCCGTGGGCATTGGTATTCAGGGATTCGCTGATGCCTTGATTCTCATGCGTTTCCC 10004105 Query 76267 ATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGC 76326 | || || |||||| ||||| | || |||||||| || || | | Sbjct 10004104 GTACGAAAGCGAAGAAGCCGGTCTCTTGAATCAGCAGATATTTGAAACGATTTACTATGG 10004045 Query 76327 ATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGG 76386 || |||| || || || ||| |||| | || ||||| | || || || | ||||| Sbjct 10004044 CGCCTTGGAAGCCAGCTGCGAACTGGCCCAGACCGAAGGTCCATACGAAACCTACGAGGG 10003985 Query 76387 TTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG--AAGGTG-AAACCAAGCT 76443 || | | | |||| | | |||| || ||||||| |||||| ||| || || Sbjct 10003984 CAGCCCGGTGAGCAAAGGAATTTTGCAGTACGACATGTGGGACAAGGTGCCAACGAACCT 10003925 Query 76444 CAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 76503 | |||||| | | ||||| ||| ||| || | ||| | || ||| || Sbjct 10003924 ---GTGGGACTGGCAGAAATTGAAGGAGTCCATTAAGAAGCACGGTGTCCGGAACTCACT 10003868 Query 76504 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 76563 | | || || ||||| || || || || || || || |||| || ||||||| ||| Sbjct 10003867 GCTCGTTGCTCCCATGCCCACTGCATCTACAGCTCAGATAATGGGCAACAATGAATCCTT 10003808 Query 76564 TGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGT 76623 || || ||||| || ||||| ||| | || || | || || || | || Sbjct 10003807 CGAGCCGTACACCACGAACATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTGGT 10003748 Query 76624 CAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTC-TCTGGTCCAAGGATATGAAGG 76682 |||| | || | | ||||| || | ||| | | ||| | | || |||||| Sbjct 10003747 CAACCATCATTTGTTGCGCGACCT-AACCGAACTGGACTTGTGGGACGACGACATGAAGA 10003689 Query 76683 ATC---TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAG---ATATCCCAGATG 76736 | | |||| | ||| || || || |||||||| || | || ||| |||||| | Sbjct 10003688 ACCAGATCATATCG--AGCAGG-GGATCGATTCAAAACAT-TGAGACCATACCCCAGAAG 10003633 Query 76737 ATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTC----ATTGAC 76792 | | || |||| ||| || |||||||||||| | | | ||| ||| | Sbjct 10003632 GT-GCGAG-ATCTGTACAAGACGGTGTGGGAAATC----TCAGTCAAGTCCACGATTAAA 10003579 Query 76793 ATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGG-A 76851 |||||||| ||||||||| ||||| ||||| ||||| | || || ||| Sbjct 10003578 ATGGCCGCCGATCGTGGTGCGTTCATAGATCAGAGTCAGTCGTTCAACATACATGTGGCC 10003519 Query 76852 AAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAA 76911 || | ||| ||| ||||| |||| || || | ||| | |||||| || || || Sbjct 10003518 GAGCCAAACTATG-GAAAGCTGACTTCCATACACTTTTACTCCTGGAAAGCAGGTCTTAA 10003460 Query 76912 AACCGGAATGTACTATCTCCGATCAAAG------GCGAAAGCCCGACCAATTCAGTTCAG 76965 |||||||||||||||||| || | ||| ||||| ||| |||||||||| Sbjct 10003459 AACCGGAATGTACTATCTGCGCACCAAGCCAGCTGCGAATGCC------ATTCAGTTCA- 10003407 Query 76966 CCTTGAAC 76973 || ||||| Sbjct 10003406 CCGTGAAC 10003399 Score = 100 bits (110), Expect = 3e-16 Identities = 200/291 (69%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 14340 AGCGCTCTATTGCCCATATGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATG 14399 ||||||| ||| | | ||| |||||| | ||||| ||| |||| || |||| Sbjct 18945879 AGCGCTCCATTCCTAGTCTGGTGGATGGCTTGAAGCCGGGTCAGCGGAAGGTTATGTTCA 18945820 Query 14400 CTTGCTTCCATAAGAATCTCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCG 14459 |||| ||| | | |||| |||| ||| |||||||||| || || | | || || | Sbjct 18945819 CTTGTTTCAAAAGGAATGACAAGCGTGAGGTGAAGGTGGCCCAGCTATCCGGATCAGTGG 18945760 Query 14460 CGGACAAGTCTGCGTACCACCATGGTGAAGTATCCTTAGCGGAC-ACGATTGTTAAGTTG 14518 |||| | ||| || |||||||| || || |||||| | || || || || || || || Sbjct 18945759 CGGAGATGTCGGCCTACCACCACGGAGAGGTATCCCT-GCAGATGACAATCGTAAATCTG 18945701 Query 14519 GCAAACGACTACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGT 14578 || | | | |||| | |||||||| || || ||||| || | |||||||||||| Sbjct 18945700 GCCCAGAATTTTGTGGGTGCGAACAACATAAATCTGCTTGAGCCACGCGGTCAATTTGGT 18945641 Query 14579 ACGCGTCTCATGGGTGGTAAGGATGCTTCTCAG-ACGAGGTACATTTTCAC 14628 || || | | ||| || || ||| | | ||| | | ||||||||||| Sbjct 18945640 ACCCGCTTGACGGGAGGCAAAGATTGTGC-CAGCGCTCGTTACATTTTCAC 18945591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596512784202720