Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 122 3e-22 seq5 104 7e-17 >seq9 Length=20829647 Score = 122 bits (134), Expect = 3e-22 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| || ||||| ||| || ||| |||||||| ||| Sbjct 10866426 TCCATAGCCTTTATAAGACGACGCTGGATGTAACCGGTTTCAGCTGTCTTTACAGCAGTA 10866485 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| ||||||||||||| || ||||| | | ||| ||| || || Sbjct 10866486 TCGATAAGACCCTCACGACCACCCATGGCGTGGAAATAGAACTCAGAGGGTGTCAGGCCG 10866545 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 ||| | | || |||| |||||||| || | ||| || || ||| ||| ||||| Sbjct 10866546 GCAAGATACGAATTCTCCACGAAACCGCGTGACTCAGGACCATAATCGTCCTTAATAAAG 10866605 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 || || || || | || | ||||| ||||| ||||| || || |||||||| || Sbjct 10866606 TGGGGAAGAGTGCGCTTGCGGAAACCGTAGGGGATTCGCTTACCCTCCACGTTCTGTTGA 10866665 Query 302815 CCCAGGCACGAAATCATCTG 302834 |||| || | ||| | ||| Sbjct 10866666 CCCACACAAGCAATAACCTG 10866685 >seq5 Length=27160941 Score = 104 bits (114), Expect = 7e-17 Identities = 148/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| || ||||||||||| ||||||||||| |||||| || || || Sbjct 11230947 ATTGTCATACGAGATGGGATAGCATGGGGGTTGATGATGATATCGGGTGCCAAGCCCTC- 11231005 Query 251905 GCA-GTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGT 251962 ||| ||||||| |||||||| || | || || |||| |||||||||||||||| Sbjct 11231006 GCAGGTGAAGGCCATATCCTCTT-GACGGTACTGAATTCCGCACGTTCCCTTTTGTCCGT 11231064 Query 251963 GACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTAC 252022 |||||||| |||||| || || || ||| || || || | |||| ||| | Sbjct 11231065 GACGAGAAGCGAACTTGTCGCCGATCTGGGGAATACGCACGGAGCGCACTCGAATCTTGC 11231124 Query 252023 AGAAGTTGTAACCATCACCGTTG 252045 |||| ||||| || || | |||| Sbjct 11231125 AGAACTTGTAGCCCTCGCTGTTG 11231147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471673923465603