Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq2 129 7e-24
seq4 111 2e-18
seq3864 96.9 4e-14
seq9 96.9 4e-14
seq1 93.3 5e-13
>seq2
Length=21544594
Score = 129 bits (142), Expect = 7e-24
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165
|||||||||| || |||||||| | |||||| || ||| | | || || ||| ||
Sbjct 8731054 AGAAGCGCACGGATGACATCTCATCTTGGGACGCTGACTTTCTCAAAGTGGACCAGGGCA 8730995
Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225
| || || || |||||||||| ||||||||||| | ||| || ||||||||| |
Sbjct 8730994 CGCTGTTCGAACTGATCCTCGCGGCCAACTACCTGAATATCCAGGGTCTGCTCGACGTCA 8730935
Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285
|||||| | |||||||| |||||||||||||||||||| |||| || ||| | ||||
Sbjct 8730934 CCTGCAAGACGGTGGCCAATATGATCAAGGGCAAGTCGCCGCAGGAAATTCGCGACACCT 8730875
Query 1592286 T 1592286
|
Sbjct 8730874 T 8730874
Score = 118 bits (130), Expect = 1e-20
Identities = 169/236 (72%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
||||||| | |||||| |||||||||||||||||||| ||| | |||| | | |
Sbjct 8575621 CCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCT 8575680
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
| ||||||| |||| || | ||||||||||| |||||||| || |||||| |
Sbjct 8575681 GCACCTCCTGACTGAATCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCAA 8575740
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--G 869808
| || ||||| |||||| ||| || |||||||||||||| | || ||||| |
Sbjct 8575741 AGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAG 8575800
Query 869809 GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864
| | ||| | | |||||||||||| ||||||||| || ||||| ||||
Sbjct 8575801 TAAG--GTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGCCT 8575854
Score = 113 bits (124), Expect = 6e-19
Identities = 163/228 (71%), Gaps = 9/228 (4%)
Strand=Plus/Plus
Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233
||| | || ||||||||| ||||| |||||| |||| | || ||||| || |||
Sbjct 8575335 TGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCG 8575394
Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293
|||||||| ||||| || |||| | ||| ||||| ||| ||||||||||| ||||||
Sbjct 8575395 CGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCG 8575454
Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTC 869350
|||||| |||||| ||||| | || | || || |||| |||||| |
Sbjct 8575455 GCAAAGGCGATGATGCGCTCCCCGAAATT----AG--CCGACTTGGACGAGATCCAGGAC 8575508
Query 869351 ATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398
| |||||||| ||||| | |||| | ||||| ||| ||||| |||
Sbjct 8575509 AGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCG 8575556
Score = 104 bits (114), Expect = 3e-16
Identities = 153/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 868718 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGC 868777
||||||||||||||||| || || ||||| |||| |||||| | || |||||
Sbjct 8575053 TCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAATGGGTTTTTG 8575112
Query 868778 GTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATG 868837
|| |||||| |||| | || | | | |||||| ||||| || || ||||| |||
Sbjct 8575113 GTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACGGTCCGCTACGAACTCAATG 8575172
Query 868838 TACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACA 868897
|||||| |||| ||| || |||||||||||| | || ||||| | ||| | |
Sbjct 8575173 TACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTGACGGGCAGGGCATCGGTGAGG 8575232
Query 868898 AACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934
||||| | ||| || | || || ||| ||||||||
Sbjct 8575233 AACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCT 8575269
>seq4
Length=24153973
Score = 111 bits (122), Expect = 2e-18
Identities = 336/504 (67%), Gaps = 20/504 (4%)
Strand=Plus/Plus
Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222
|||| ||| |||||||||||||| || || ||||| ||||| || | ||||| || |
Sbjct 16026011 AAGGTAAAAATCTTGCGCTGGTCCACGCCACCGAACTGTGCGTCCACCTTGAGGTACTCC 16026070
Query 1852223 TCGTCGAGGGCCTGCATGAGCGGG-TAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCAT 1852281
||||| || ||||||| || |||| ||||||| | || || |||| ||||
Sbjct 16026071 TCGTCCAGAGCCTGCA-GACCGGGATAGAGCAAACCGGAGAGCAGTGGGTAC---TCCAC 16026126
Query 1852282 CT---TGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGCCG-GTGCGCACGTGCGCCGC 1852335
|| ||||||||| ||| | ||||| | || |||| | ||| |||| | || |
Sbjct 16026127 CTGTTTGACCACCTCTGCGCCCGCCTTCTTGGCATCGTGTTGCGTGACCACG-GAGCTGA 16026185
Query 1852336 GAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CA-CTGGTACTCGGTGCCGCGCACA 1852393
| | ||| | || || | ||| | || | || ||| || ||| |||| ||
Sbjct 16026186 GCTT--GTATACATCCAGGGTGTA--CTCCTTGGACAGCTGATAGTCGCTGCCCTTGACG 16026241
Query 1852394 AACTCGAGTCCGCCCAGCGGCACGCCGAT-GTGCTGGAGCATGGCCTTGATGGCAAACTC 1852452
|||| || ||||||| |||||||| | ||| | ||||||||||||| | ||
Sbjct 16026242 AACTTCAGCTTATCCAGCGGAACGCCGATTGAGCTCAA-CATGGCCTTGATGACCTGTTC 16026300
Query 1852453 GTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGC 1852512
||| | || || | || | ||| ||| || | ||| |||||| || | |||
Sbjct 16026301 GTAGTACTGGGTGCGCAGCTCCAGCAGAGACCAGGGTGCCTTCATGTTGTCCAGATAGGC 16026360
Query 1852513 GTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTT 1852572
||| | ||||| || ||||| | || || || |||| || || ||||| | ||
Sbjct 16026361 GTGGAGATCGGCGAACAGGATAGTCACTTCGCATCCTGCCTTCAGGAAATCGGCAATCTT 16026420
Query 1852573 GAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATAT 1852632
| |||||||| || ||| | | || || |||||||||| |||||| ||||| || ||
Sbjct 16026421 CGACATGGGCACGAAATAGGCGACATGTGGCTTGCCCGTCGTCGCCGTTCCCCAGTAGAT 16026480
Query 1852633 GATCAGGGGGCGCTCGGCCATGAT 1852656
|||| ||||| | || |||
Sbjct 16026481 CTTCAGATCTCGCTCCGACAGGAT 16026504
Score = 107 bits (118), Expect = 2e-17
Identities = 234/347 (67%), Gaps = 4/347 (1%)
Strand=Plus/Minus
Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954
|||||| || ||| ||||||||| || | |||| |||||| || | | || ||||
Sbjct 4095944 GGGTCCTCCAGGCGTGGGCAAGACAACCACCATCCAGTGTCTTGCTAGGATTCTTCTGGG 4095885
Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014
| | | | ||||| || ||||| || || || || | || || || |||| ||
Sbjct 4095884 AGACAGCTACAAGGAGGCTGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGT 4095825
Query 1574015 CGTGCGCAAGATCATCAAGCACCACGC-CTCCAAGAGGATCGACCT-GCCGCCCGGACGC 1574072
|| ||||| | |||||| || | ||| ||| ||| | ||||| || |
Sbjct 4095824 GGTCCGCAACAAGATCAAGATGTTTGCTCAGCAAAAGGT--GACATTGCCGCGGGGCAGG 4095767
Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132
|||||| | | || || |||||||| ||| || | ||| || ||||||||||| |||
Sbjct 4095766 CACAAGATTGTGATTCTGGACGAGGCAGACAGCATGACGGAGGGTGCCCAGCAGGCACTG 4095707
Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192
|| |||||||| | ||| || ||| || || ||||||||||| ||||||||
Sbjct 4095706 CGCCGGACCATGGAGATCTACAGCAGCACCACTCGTTTTGCCCTGGCCTGCAACACCAGC 4095647
Query 1574193 TCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239
|| | |||| ||| | |||| ||||||||||| || || ||
Sbjct 4095646 GAGAAGATCATAGAGCCTATCCAGTCCCGCTGCGCCATGCTACGATT 4095600
>seq3864
Length=3213
Score = 96.9 bits (106), Expect = 4e-14
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||||| || || ||| | |||||| || || || ||||| || || || ||
Sbjct 1525 GCTTGGCCAACTCTCCCGGCAGAAGCAGGCGAACAGCCGTTTGGATTTCTCGACTGGTGA 1584
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||| |||||||| ||||||| | ||||| |||| |
Sbjct 1585 TGGTCGAGCGCTTGTTGTAGTGAGCCAGACGAGACGCCTCGGCAGCAATGCGCTCGAAAA 1644
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
| || || ||||| |||||||| ||||| ||| || ||||| ||| || |
Sbjct 1645 TATCATTTACAAAGCTGTTCATGATGCTCATCGCCTTAGATGAAATGCCGGTGTCAGGAT 1704
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548
| ||||||||||| |||||||| |||
Sbjct 1705 GGACCTGCTTGAGAACCTTGTAAATG 1730
>seq9
Length=20829647
Score = 96.9 bits (106), Expect = 4e-14
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 1592153 GTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCT 1592212
||||| ||| ||| | |||||| | || | || || ||||| || |||||||||
Sbjct 462825 GTCGACCAGGGCACATTGTTTGAGCTTATATTGGCAGCGAACTATCTGGACATCAAGGGC 462884
Query 1592213 CTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAG 1592272
|| || || || |||||| |||| || |||||||| ||||| ||| | ||||||||
Sbjct 462885 CTCCTGGAGCTCACCTGCAAGACTGTTGCAAACATGATTAAGGGAAAGACTCCCGAGGAA 462944
Query 1592273 ATCCGCAAGACCTTTAACATCAA 1592295
|| ||||||||||| ||||| ||
Sbjct 462945 ATACGCAAGACCTTCAACATTAA 462967
>seq1
Length=23539531
Score = 93.3 bits (102), Expect = 5e-13
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 1628407 GGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTC 1628466
|| || | ||||||||| || || || | || |||| ||| ||||| || ||
Sbjct 10004600 GGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATC 10004659
Query 1628467 CACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGG 1628526
||||| |||||||| || ||||| || || ||||| || ||||| |||||| || ||
Sbjct 10004660 CACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGT 10004719
Query 1628527 TCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 1628586
|| || | || | | || | |||||| || ||||| || ||||||||| || |
Sbjct 10004720 TCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACCGGGG 10004779
Query 1628587 CGCTTGCCGCCGCC 1628600
||||||||||| ||
Sbjct 10004780 CGCTTGCCGCCTCC 10004793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106513949180223
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