Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 129 7e-24 seq4 111 2e-18 seq3864 96.9 4e-14 seq9 96.9 4e-14 seq1 93.3 5e-13 >seq2 Length=21544594 Score = 129 bits (142), Expect = 7e-24 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| || |||||||| | |||||| || ||| | | || || ||| || Sbjct 8731054 AGAAGCGCACGGATGACATCTCATCTTGGGACGCTGACTTTCTCAAAGTGGACCAGGGCA 8730995 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || || |||||||||| ||||||||||| | ||| || ||||||||| | Sbjct 8730994 CGCTGTTCGAACTGATCCTCGCGGCCAACTACCTGAATATCCAGGGTCTGCTCGACGTCA 8730935 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | |||||||| |||||||||||||||||||| |||| || ||| | |||| Sbjct 8730934 CCTGCAAGACGGTGGCCAATATGATCAAGGGCAAGTCGCCGCAGGAAATTCGCGACACCT 8730875 Query 1592286 T 1592286 | Sbjct 8730874 T 8730874 Score = 118 bits (130), Expect = 1e-20 Identities = 169/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| | |||||| |||||||||||||||||||| ||| | |||| | | | Sbjct 8575621 CCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCT 8575680 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||||| |||| || | ||||||||||| |||||||| || |||||| | Sbjct 8575681 GCACCTCCTGACTGAATCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCAA 8575740 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--G 869808 | || ||||| |||||| ||| || |||||||||||||| | || ||||| | Sbjct 8575741 AGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAG 8575800 Query 869809 GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 | | ||| | | |||||||||||| ||||||||| || ||||| |||| Sbjct 8575801 TAAG--GTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGCCT 8575854 Score = 113 bits (124), Expect = 6e-19 Identities = 163/228 (71%), Gaps = 9/228 (4%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | || ||||||||| ||||| |||||| |||| | || ||||| || ||| Sbjct 8575335 TGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCG 8575394 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 |||||||| ||||| || |||| | ||| ||||| ||| ||||||||||| |||||| Sbjct 8575395 CGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCG 8575454 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTC 869350 |||||| |||||| ||||| | || | || || |||| |||||| | Sbjct 8575455 GCAAAGGCGATGATGCGCTCCCCGAAATT----AG--CCGACTTGGACGAGATCCAGGAC 8575508 Query 869351 ATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||||| ||||| | |||| | ||||| ||| ||||| ||| Sbjct 8575509 AGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCG 8575556 Score = 104 bits (114), Expect = 3e-16 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 868718 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGC 868777 ||||||||||||||||| || || ||||| |||| |||||| | || ||||| Sbjct 8575053 TCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAATGGGTTTTTG 8575112 Query 868778 GTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATG 868837 || |||||| |||| | || | | | |||||| ||||| || || ||||| ||| Sbjct 8575113 GTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACGGTCCGCTACGAACTCAATG 8575172 Query 868838 TACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACA 868897 |||||| |||| ||| || |||||||||||| | || ||||| | ||| | | Sbjct 8575173 TACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTGACGGGCAGGGCATCGGTGAGG 8575232 Query 868898 AACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 ||||| | ||| || | || || ||| |||||||| Sbjct 8575233 AACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCT 8575269 >seq4 Length=24153973 Score = 111 bits (122), Expect = 2e-18 Identities = 336/504 (67%), Gaps = 20/504 (4%) Strand=Plus/Plus Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222 |||| ||| |||||||||||||| || || ||||| ||||| || | ||||| || | Sbjct 16026011 AAGGTAAAAATCTTGCGCTGGTCCACGCCACCGAACTGTGCGTCCACCTTGAGGTACTCC 16026070 Query 1852223 TCGTCGAGGGCCTGCATGAGCGGG-TAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCAT 1852281 ||||| || ||||||| || |||| ||||||| | || || |||| |||| Sbjct 16026071 TCGTCCAGAGCCTGCA-GACCGGGATAGAGCAAACCGGAGAGCAGTGGGTAC---TCCAC 16026126 Query 1852282 CT---TGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGCCG-GTGCGCACGTGCGCCGC 1852335 || ||||||||| ||| | ||||| | || |||| | ||| |||| | || | Sbjct 16026127 CTGTTTGACCACCTCTGCGCCCGCCTTCTTGGCATCGTGTTGCGTGACCACG-GAGCTGA 16026185 Query 1852336 GAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CA-CTGGTACTCGGTGCCGCGCACA 1852393 | | ||| | || || | ||| | || | || ||| || ||| |||| || Sbjct 16026186 GCTT--GTATACATCCAGGGTGTA--CTCCTTGGACAGCTGATAGTCGCTGCCCTTGACG 16026241 Query 1852394 AACTCGAGTCCGCCCAGCGGCACGCCGAT-GTGCTGGAGCATGGCCTTGATGGCAAACTC 1852452 |||| || ||||||| |||||||| | ||| | ||||||||||||| | || Sbjct 16026242 AACTTCAGCTTATCCAGCGGAACGCCGATTGAGCTCAA-CATGGCCTTGATGACCTGTTC 16026300 Query 1852453 GTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGC 1852512 ||| | || || | || | ||| ||| || | ||| |||||| || | ||| Sbjct 16026301 GTAGTACTGGGTGCGCAGCTCCAGCAGAGACCAGGGTGCCTTCATGTTGTCCAGATAGGC 16026360 Query 1852513 GTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTT 1852572 ||| | ||||| || ||||| | || || || |||| || || ||||| | || Sbjct 16026361 GTGGAGATCGGCGAACAGGATAGTCACTTCGCATCCTGCCTTCAGGAAATCGGCAATCTT 16026420 Query 1852573 GAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATAT 1852632 | |||||||| || ||| | | || || |||||||||| |||||| ||||| || || Sbjct 16026421 CGACATGGGCACGAAATAGGCGACATGTGGCTTGCCCGTCGTCGCCGTTCCCCAGTAGAT 16026480 Query 1852633 GATCAGGGGGCGCTCGGCCATGAT 1852656 |||| ||||| | || ||| Sbjct 16026481 CTTCAGATCTCGCTCCGACAGGAT 16026504 Score = 107 bits (118), Expect = 2e-17 Identities = 234/347 (67%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954 |||||| || ||| ||||||||| || | |||| |||||| || | | || |||| Sbjct 4095944 GGGTCCTCCAGGCGTGGGCAAGACAACCACCATCCAGTGTCTTGCTAGGATTCTTCTGGG 4095885 Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014 | | | | ||||| || ||||| || || || || | || || || |||| || Sbjct 4095884 AGACAGCTACAAGGAGGCTGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGT 4095825 Query 1574015 CGTGCGCAAGATCATCAAGCACCACGC-CTCCAAGAGGATCGACCT-GCCGCCCGGACGC 1574072 || ||||| | |||||| || | ||| ||| ||| | ||||| || | Sbjct 4095824 GGTCCGCAACAAGATCAAGATGTTTGCTCAGCAAAAGGT--GACATTGCCGCGGGGCAGG 4095767 Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132 |||||| | | || || |||||||| ||| || | ||| || ||||||||||| ||| Sbjct 4095766 CACAAGATTGTGATTCTGGACGAGGCAGACAGCATGACGGAGGGTGCCCAGCAGGCACTG 4095707 Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192 || |||||||| | ||| || ||| || || ||||||||||| |||||||| Sbjct 4095706 CGCCGGACCATGGAGATCTACAGCAGCACCACTCGTTTTGCCCTGGCCTGCAACACCAGC 4095647 Query 1574193 TCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239 || | |||| ||| | |||| ||||||||||| || || || Sbjct 4095646 GAGAAGATCATAGAGCCTATCCAGTCCCGCTGCGCCATGCTACGATT 4095600 >seq3864 Length=3213 Score = 96.9 bits (106), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || || ||| | |||||| || || || ||||| || || || || Sbjct 1525 GCTTGGCCAACTCTCCCGGCAGAAGCAGGCGAACAGCCGTTTGGATTTCTCGACTGGTGA 1584 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| |||||||| ||||||| | ||||| |||| | Sbjct 1585 TGGTCGAGCGCTTGTTGTAGTGAGCCAGACGAGACGCCTCGGCAGCAATGCGCTCGAAAA 1644 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | || || ||||| |||||||| ||||| ||| || ||||| ||| || | Sbjct 1645 TATCATTTACAAAGCTGTTCATGATGCTCATCGCCTTAGATGAAATGCCGGTGTCAGGAT 1704 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||||||||||| |||||||| ||| Sbjct 1705 GGACCTGCTTGAGAACCTTGTAAATG 1730 >seq9 Length=20829647 Score = 96.9 bits (106), Expect = 4e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 1592153 GTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCT 1592212 ||||| ||| ||| | |||||| | || | || || ||||| || ||||||||| Sbjct 462825 GTCGACCAGGGCACATTGTTTGAGCTTATATTGGCAGCGAACTATCTGGACATCAAGGGC 462884 Query 1592213 CTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAG 1592272 || || || || |||||| |||| || |||||||| ||||| ||| | |||||||| Sbjct 462885 CTCCTGGAGCTCACCTGCAAGACTGTTGCAAACATGATTAAGGGAAAGACTCCCGAGGAA 462944 Query 1592273 ATCCGCAAGACCTTTAACATCAA 1592295 || ||||||||||| ||||| || Sbjct 462945 ATACGCAAGACCTTCAACATTAA 462967 >seq1 Length=23539531 Score = 93.3 bits (102), Expect = 5e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 1628407 GGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTC 1628466 || || | ||||||||| || || || | || |||| ||| ||||| || || Sbjct 10004600 GGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATC 10004659 Query 1628467 CACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGG 1628526 ||||| |||||||| || ||||| || || ||||| || ||||| |||||| || || Sbjct 10004660 CACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGT 10004719 Query 1628527 TCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 1628586 || || | || | | || | |||||| || ||||| || ||||||||| || | Sbjct 10004720 TCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACCGGGG 10004779 Query 1628587 CGCTTGCCGCCGCC 1628600 ||||||||||| || Sbjct 10004780 CGCTTGCCGCCTCC 10004793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106513949180223