Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq9 167 2e-36 seq4 86.0 5e-12 >seq9 Length=20829647 Score = 167 bits (184), Expect = 2e-36 Identities = 169/218 (78%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 |||| ||| | | |||| || |||||||||||||| || |||||||| || || || || Sbjct 15043559 TTGTGATCAAACAGCGTCTGGGCGCCCAGCTCGCAACCAAAGTACTTGGTTGGATAGGTG 15043618 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 ||||| ||||| | ||| | || | ||| | ||||||||| | || |||||||||||| Sbjct 15043619 GCCGGGCGTCCGATGGCCCTAGCCACTTCCGCCATGTTGACCAGCACGGTCTTGATGCCG 15043678 Query 34552 TTGCCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 || ||||| || |||||||| || ||||| || ||||| |||||||| ||||| || Sbjct 15043679 TTTCCCTTGCCCTCGACCTTTGCCTGCAGA--CGTGGCATCTTGTAGCGATAGAAGATGT 15043736 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 ||| |||| ||||||| ||||| || || ||||| || Sbjct 15043737 CCGTCACACTGCGGTTTACGTTTACGGTGGCCATCTTG 15043774 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34200 TGCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTG 34259 || ||||||||| |||| ||||| ||||| | ||||| | | ||| || || Sbjct 15043263 TGACGGCGGGTTCTTCACAATGAATGTGTTCACTTTATGGTTAACCTTGAGCAGACCATG 15043322 Query 34260 ATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTC 34319 | |||||||| ||||| ||| | || | | ||||| || ||||| | | | Sbjct 15043323 GAAGCCGCATGCCTTGCAAGACTGCGAAATGGTCTGGTTTTTGGCTGACACAGTCAAATT 15043382 Query 34320 AGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAG 34379 |||||||| ||||| || || || || |||||||||||||| || |||||||| | || Sbjct 15043383 GGTCTCCGGATTGTCGCACTCAGGGCATAACACAAACTTGCGAATAAAACCATCCAACAA 15043442 Query 34380 GTCCTGTAACTT 34391 ||||| ||||| Sbjct 15043443 ATCCTGCAACTT 15043454 >seq4 Length=24153973 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 || || ||||| |||||||||||||| ||||| |||| || ||| ||||| | ||| || Sbjct 10848111 GGTCTCCACGGATTCCACGTGCACGAGTTTGGAGACAACACCAATGGCTGCATGTCGTCC 10848052 Query 107231 GGTGAACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAA-AGGC 107288 || |||||||| ||| || ||| | ||||| || |||| || || |||| | | Sbjct 10848051 GGACCGCACTTCAA-CCCGTATGGCAAGGAGCACGGCGCTCCCGTCGACG-AGAACCGTC 10847994 Query 107289 ACGTCGGCGATCTGGGCAAC 107308 || | ||||||||||||||| Sbjct 10847993 ACCTGGGCGATCTGGGCAAC 10847974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412803264948167