Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 2e-26
seq3864 123 4e-22
seq4 122 1e-21
seq1 116 6e-20
seq9 91.5 2e-12
>seq2
Length=21544594
Score = 138 bits (152), Expect = 2e-26
Identities = 228/328 (70%), Gaps = 7/328 (2%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| ||||||||| ||||| |||||| ||| | || ||||| || |||||||||
Sbjct 8575341 CCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCTTC 8575400
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|| ||||| || |||| ||| ||||| ||| ||||||||||| ||||||||||||
Sbjct 8575401 TTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGCAAAG 8575460
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG--TTGATCCACTTCATCGCCC 794518
||| || ||||| | ||| | ||| ||| | |||||| || ||||
Sbjct 8575461 GCGATGATGCGCTCCCCGAAATT-----AGCCGACTTGGACGAGATCCAGGACAGGGCCC 8575515
Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578
| |||||||| | |||| | |||| ||| ||||| ||| || |||| || ||
Sbjct 8575516 AGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCTCGCT 8575575
Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638
| || ||| || ||| |||||||| | | ||| |||| ||||| | ||| |
Sbjct 8575576 GGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCT 8575635
Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666
| ||||||||||||||||| || |||||
Sbjct 8575636 CCATGGCGATCTGGAAGCCGTAGAAGCA 8575663
Score = 107 bits (118), Expect = 3e-17
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625
|| |||||||| || ||||| || | |||||| | |||| | | || ||||| |
Sbjct 8731055 GAGAAGCGCACGGATGACATCTCATCTTGGGACGCTGACTTTCTCAAAGTGGACCAGGGC 8730996
Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685
|| || || || |||||||||| ||||||||||| | ||| || || ||||| |
Sbjct 8730995 ACGCTGTTCGAACTGATCCTCGCGGCCAACTACCTGAATATCCAGGGTCTGCTCGACGTC 8730936
Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745
|||||||| |||||||| | ||||||||||||||||| |||| || ||| | |||
Sbjct 8730935 ACCTGCAAGACGGTGGCCAATATGATCAAGGGCAAGTCGCCGCAGGAAATTCGCGACACC 8730876
Query 2035746 TT 2035747
||
Sbjct 8730875 TT 8730874
Score = 102 bits (112), Expect = 1e-15
Identities = 155/218 (71%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985
||||||||||||||||| || || ||||| |||| |||||| | || |||||
Sbjct 8575053 TCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAATGGGTTTTTG 8575112
Query 793986 GTCAGGTAGTGCTTCTCGCAC-CCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044
|| |||| ||| || || || | | | | |||| ||||| || ||||| |||||
Sbjct 8575113 GTGTTGTAGATCTT-TCCAACGCCCAACTCCACGAGCAAACGGTCCGCTACGAACTCAAT 8575171
Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGAC 794104
||||||| |||| ||| || |||||||||||| | |||||||| | ||| |||
Sbjct 8575172 GTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTGACGGGCAGGGCATCGGTGAG 8575231
Query 794105 AAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142
||||| | ||| || | || || ||| ||||||||
Sbjct 8575232 GAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCT 8575269
>seq3864
Length=3213
Score = 123 bits (136), Expect = 4e-22
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||| || ||| |||||| || || |||
Sbjct 1486 TGTACTTGGTGACAGCCTTGGTTCCCTCACTGACAGCATGCTTGGCCAACTCTCCCGGCA 1545
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||| || || || ||||| || || || ||| || ||||||||| |
Sbjct 1546 GAAGCAGGCGAACAGCCGTTTGGATTTCTCGACTGGTGATGGTCGAGCGCTTGTTGTAGT 1605
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| ||||| || ||||||| | ||||| |||| || || || ||||| |||||
Sbjct 1606 GAGCCAGACGAGACGCCTCGGCAGCAATGCGCTCGAAAATATCATTTACAAAGCTGTTCA 1665
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||||| || || ||||| ||| || || ||||||||||| |||||||
Sbjct 1666 TGATGCTCATCGCCTTAGATGAAATGCCGGTGTCAGGATGGACCTGCTTGAGAACCTTGT 1725
Query 1485710 AAA 1485712
|||
Sbjct 1726 AAA 1728
>seq4
Length=24153973
Score = 122 bits (134), Expect = 1e-21
Identities = 348/524 (66%), Gaps = 16/524 (3%)
Strand=Plus/Plus
Query 2411460 GTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTT 2411519
||| |||||||| |||||||| | |||||||| | || |||| ||| |||||
Sbjct 16025965 GTGAATGCGCTTTTCGTAGCCCAACTGCGGCAGGTACTTCTCCGAGAAGGTAAAAATCTT 16026024
Query 2411520 GCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTG 2411579
||||||||| || || ||||| ||||| || | ||||| || |||||| || |||||
Sbjct 16026025 GCGCTGGTCCACGCCACCGAACTGTGCGTCCACCTTGAGGTACTCCTCGTCCAGAGCCTG 16026084
Query 2411580 CATGAGCGGG-TAGACGAGGTTGCTGAGCGGCGGGTTGCGGTCCATCT---TGACCACCT 2411635
|| || |||| |||| | | |||| | |||| |||| || |||||||||
Sbjct 16026085 CA-GACCGGGATAGAGCAAACCGGAGAGCAGTGGGTAC---TCCACCTGTTTGACCACCT 16026140
Query 2411636 GGGCGGCGGCCTTTTGCGC--CGTGCCGACGGTC-ACGCGCGCCGTCAGGCGCAAGAGGT 2411692
||| | ||||| | || |||| | | | ||| | || | || | | |
Sbjct 16026141 CTGCGCCCGCCTTCTTGGCATCGTGTTGCGTGACCACG-GAGCTG--AGCTTGTATACAT 16026197
Query 2411693 CGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCA 2411752
| || ||||| | | |||| || |||||||| || || | || |||||
Sbjct 16026198 CCAGGGTGTACTCCTTGGACAGCTGATAGTCGCTGCCCTTGACGAACTTCAGCTTATCCA 16026257
Query 2411753 GCGGGACGCCAAT-GTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGG 2411811
|||| ||||| || | ||| | ||||||||||||| | ||||| | || ||
Sbjct 16026258 GCGGAACGCCGATTGAGCTCAA-CATGGCCTTGATGACCTGTTCGTAGTACTGGGTGCGC 16026316
Query 2411812 TGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAG 2411871
|||| | || ||| || | ||| ||||| || | |||||| | ||||| ||
Sbjct 16026317 AGCTCCAGCAGAGACCAGGGTGCCTTCATGTTGTCCAGATAGGCGTGGAGATCGGCGAAC 16026376
Query 2411872 AGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAG 2411931
||||| |||| ||||| |||| || || ||||| | || | |||||||| ||
Sbjct 16026377 AGGATAGTCACTTCGCATCCTGCCTTCAGGAAATCGGCAATCTTCGACATGGGCACGAAA 16026436
Query 2411932 TAGCCCAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAAT 2411975
||| | | ||| ||||||||||||| ||| || ||||| || ||
Sbjct 16026437 TAGGCGACATGTGGCTTGCCCGTCGTCGCCGTTCCCCAGTAGAT 16026480
Score = 91.5 bits (100), Expect = 2e-12
Identities = 224/337 (66%), Gaps = 2/337 (1%)
Strand=Plus/Minus
Query 2019032 GGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGG 2019091
||| || || ||| ||||||||| || | |||| ||| || || | | || ||||
Sbjct 4095944 GGGTCCTCCAGGCGTGGGCAAGACAACCACCATCCAGTGTCTTGCTAGGATTCTTCTGGG 4095885
Query 2019092 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGT 2019151
| | | | ||||| || ||||| || ||||| || | || || || | || ||
Sbjct 4095884 AGACAGCTACAAGGAGGCTGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGT 4095825
Query 2019152 CGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCT-GCCGCCCGGCCGCC 2019210
|| || | | |||||| ||| | ||| | ||| | ||||| ||| | |
Sbjct 4095824 GGTCCGCAACAAGATCAAGATGTTTGCTCAGCAAAAGGT-GACATTGCCGCGGGGCAGGC 4095766
Query 2019211 ACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCC 2019270
||||| | | || || || ||||| ||| || | ||| || ||||||||||| || |
Sbjct 4095765 ACAAGATTGTGATTCTGGACGAGGCAGACAGCATGACGGAGGGTGCCCAGCAGGCACTGC 4095706
Query 2019271 GATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGT 2019330
| ||||||||| | |||| || ||| || || ||||| ||||||||||||||
Sbjct 4095705 GCCGGACCATGGAGATCTACAGCAGCACCACTCGTTTTGCCCTGGCCTGCAACACCAGCG 4095646
Query 2019331 CGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCAT 2019367
|| | |||| || | ||||| ||| ||||||||
Sbjct 4095645 AGAAGATCATAGAGCCTATCCAGTCCCGCTGCGCCAT 4095609
>seq1
Length=23539531
Score = 116 bits (128), Expect = 6e-20
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 2071819 GGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTC 2071878
||||| | ||||||||| || ||| | | ||||||| ||| || || ||| ||
Sbjct 10004600 GGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATC 10004659
Query 2071879 CACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGG 2071938
|||||| ||||||| |||||||| || || ||||| || ||||| |||||| |||||
Sbjct 10004660 CACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGT 10004719
Query 2071939 TCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 2071998
|| || | || | || || | |||||| || ||||| || ||||||||| || |
Sbjct 10004720 TCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACCGGGG 10004779
Query 2071999 CGCTTGCCGCCGCC 2072012
||||||||||| ||
Sbjct 10004780 CGCTTGCCGCCTCC 10004793
>seq9
Length=20829647
Score = 91.5 bits (100), Expect = 2e-12
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 2035614 GTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCC 2035673
|||||||| ||| | |||||| | || | || || ||||| || ||||||||| |
Sbjct 462825 GTCGACCAGGGCACATTGTTTGAGCTTATATTGGCAGCGAACTATCTGGACATCAAGGGC 462884
Query 2035674 CTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGAC 2035733
||||| || | |||||||| || || ||| | || ||||| ||| | ||||||||
Sbjct 462885 CTCCTGGAGCTCACCTGCAAGACTGTTGCAAACATGATTAAGGGAAAGACTCCCGAGGAA 462944
Query 2035734 ATCCGCAAGACCTTTAACATCAA 2035756
|| ||||||||||| ||||| ||
Sbjct 462945 ATACGCAAGACCTTCAACATTAA 462967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915435932219741
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |