Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 138 2e-26 seq3864 123 4e-22 seq4 122 1e-21 seq1 116 6e-20 seq9 91.5 2e-12 >seq2 Length=21544594 Score = 138 bits (152), Expect = 2e-26 Identities = 228/328 (70%), Gaps = 7/328 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||||||| ||||| |||||| ||| | || ||||| || ||||||||| Sbjct 8575341 CCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCTTC 8575400 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || |||| ||| ||||| ||| ||||||||||| |||||||||||| Sbjct 8575401 TTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGCAAAG 8575460 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG--TTGATCCACTTCATCGCCC 794518 ||| || ||||| | ||| | ||| ||| | |||||| || |||| Sbjct 8575461 GCGATGATGCGCTCCCCGAAATT-----AGCCGACTTGGACGAGATCCAGGACAGGGCCC 8575515 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | |||||||| | |||| | |||| ||| ||||| ||| || |||| || || Sbjct 8575516 AGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCTCGCT 8575575 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | || ||| || ||| |||||||| | | ||| |||| ||||| | ||| | Sbjct 8575576 GGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCT 8575635 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | ||||||||||||||||| || ||||| Sbjct 8575636 CCATGGCGATCTGGAAGCCGTAGAAGCA 8575663 Score = 107 bits (118), Expect = 3e-17 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || |||||||| || ||||| || | |||||| | |||| | | || ||||| | Sbjct 8731055 GAGAAGCGCACGGATGACATCTCATCTTGGGACGCTGACTTTCTCAAAGTGGACCAGGGC 8730996 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || || || || |||||||||| ||||||||||| | ||| || || ||||| | Sbjct 8730995 ACGCTGTTCGAACTGATCCTCGCGGCCAACTACCTGAATATCCAGGGTCTGCTCGACGTC 8730936 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 |||||||| |||||||| | ||||||||||||||||| |||| || ||| | ||| Sbjct 8730935 ACCTGCAAGACGGTGGCCAATATGATCAAGGGCAAGTCGCCGCAGGAAATTCGCGACACC 8730876 Query 2035746 TT 2035747 || Sbjct 8730875 TT 8730874 Score = 102 bits (112), Expect = 1e-15 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 ||||||||||||||||| || || ||||| |||| |||||| | || ||||| Sbjct 8575053 TCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAATGGGTTTTTG 8575112 Query 793986 GTCAGGTAGTGCTTCTCGCAC-CCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 || |||| ||| || || || | | | | |||| ||||| || ||||| ||||| Sbjct 8575113 GTGTTGTAGATCTT-TCCAACGCCCAACTCCACGAGCAAACGGTCCGCTACGAACTCAAT 8575171 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGAC 794104 ||||||| |||| ||| || |||||||||||| | |||||||| | ||| ||| Sbjct 8575172 GTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTGACGGGCAGGGCATCGGTGAG 8575231 Query 794105 AAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||||| | ||| || | || || ||| |||||||| Sbjct 8575232 GAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCT 8575269 >seq3864 Length=3213 Score = 123 bits (136), Expect = 4e-22 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||| || ||| |||||| || || ||| Sbjct 1486 TGTACTTGGTGACAGCCTTGGTTCCCTCACTGACAGCATGCTTGGCCAACTCTCCCGGCA 1545 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| || || || ||||| || || || ||| || ||||||||| | Sbjct 1546 GAAGCAGGCGAACAGCCGTTTGGATTTCTCGACTGGTGATGGTCGAGCGCTTGTTGTAGT 1605 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || ||||||| | ||||| |||| || || || ||||| ||||| Sbjct 1606 GAGCCAGACGAGACGCCTCGGCAGCAATGCGCTCGAAAATATCATTTACAAAGCTGTTCA 1665 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| || || ||||| ||| || || ||||||||||| ||||||| Sbjct 1666 TGATGCTCATCGCCTTAGATGAAATGCCGGTGTCAGGATGGACCTGCTTGAGAACCTTGT 1725 Query 1485710 AAA 1485712 ||| Sbjct 1726 AAA 1728 >seq4 Length=24153973 Score = 122 bits (134), Expect = 1e-21 Identities = 348/524 (66%), Gaps = 16/524 (3%) Strand=Plus/Plus Query 2411460 GTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTT 2411519 ||| |||||||| |||||||| | |||||||| | || |||| ||| ||||| Sbjct 16025965 GTGAATGCGCTTTTCGTAGCCCAACTGCGGCAGGTACTTCTCCGAGAAGGTAAAAATCTT 16026024 Query 2411520 GCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTG 2411579 ||||||||| || || ||||| ||||| || | ||||| || |||||| || ||||| Sbjct 16026025 GCGCTGGTCCACGCCACCGAACTGTGCGTCCACCTTGAGGTACTCCTCGTCCAGAGCCTG 16026084 Query 2411580 CATGAGCGGG-TAGACGAGGTTGCTGAGCGGCGGGTTGCGGTCCATCT---TGACCACCT 2411635 || || |||| |||| | | |||| | |||| |||| || ||||||||| Sbjct 16026085 CA-GACCGGGATAGAGCAAACCGGAGAGCAGTGGGTAC---TCCACCTGTTTGACCACCT 16026140 Query 2411636 GGGCGGCGGCCTTTTGCGC--CGTGCCGACGGTC-ACGCGCGCCGTCAGGCGCAAGAGGT 2411692 ||| | ||||| | || |||| | | | ||| | || | || | | | Sbjct 16026141 CTGCGCCCGCCTTCTTGGCATCGTGTTGCGTGACCACG-GAGCTG--AGCTTGTATACAT 16026197 Query 2411693 CGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCA 2411752 | || ||||| | | |||| || |||||||| || || | || ||||| Sbjct 16026198 CCAGGGTGTACTCCTTGGACAGCTGATAGTCGCTGCCCTTGACGAACTTCAGCTTATCCA 16026257 Query 2411753 GCGGGACGCCAAT-GTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGG 2411811 |||| ||||| || | ||| | ||||||||||||| | ||||| | || || Sbjct 16026258 GCGGAACGCCGATTGAGCTCAA-CATGGCCTTGATGACCTGTTCGTAGTACTGGGTGCGC 16026316 Query 2411812 TGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAG 2411871 |||| | || ||| || | ||| ||||| || | |||||| | ||||| || Sbjct 16026317 AGCTCCAGCAGAGACCAGGGTGCCTTCATGTTGTCCAGATAGGCGTGGAGATCGGCGAAC 16026376 Query 2411872 AGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAG 2411931 ||||| |||| ||||| |||| || || ||||| | || | |||||||| || Sbjct 16026377 AGGATAGTCACTTCGCATCCTGCCTTCAGGAAATCGGCAATCTTCGACATGGGCACGAAA 16026436 Query 2411932 TAGCCCAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAAT 2411975 ||| | | ||| ||||||||||||| ||| || ||||| || || Sbjct 16026437 TAGGCGACATGTGGCTTGCCCGTCGTCGCCGTTCCCCAGTAGAT 16026480 Score = 91.5 bits (100), Expect = 2e-12 Identities = 224/337 (66%), Gaps = 2/337 (1%) Strand=Plus/Minus Query 2019032 GGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGG 2019091 ||| || || ||| ||||||||| || | |||| ||| || || | | || |||| Sbjct 4095944 GGGTCCTCCAGGCGTGGGCAAGACAACCACCATCCAGTGTCTTGCTAGGATTCTTCTGGG 4095885 Query 2019092 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGT 2019151 | | | | ||||| || ||||| || ||||| || | || || || | || || Sbjct 4095884 AGACAGCTACAAGGAGGCTGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGT 4095825 Query 2019152 CGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCT-GCCGCCCGGCCGCC 2019210 || || | | |||||| ||| | ||| | ||| | ||||| ||| | | Sbjct 4095824 GGTCCGCAACAAGATCAAGATGTTTGCTCAGCAAAAGGT-GACATTGCCGCGGGGCAGGC 4095766 Query 2019211 ACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCC 2019270 ||||| | | || || || ||||| ||| || | ||| || ||||||||||| || | Sbjct 4095765 ACAAGATTGTGATTCTGGACGAGGCAGACAGCATGACGGAGGGTGCCCAGCAGGCACTGC 4095706 Query 2019271 GATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGT 2019330 | ||||||||| | |||| || ||| || || ||||| |||||||||||||| Sbjct 4095705 GCCGGACCATGGAGATCTACAGCAGCACCACTCGTTTTGCCCTGGCCTGCAACACCAGCG 4095646 Query 2019331 CGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCAT 2019367 || | |||| || | ||||| ||| |||||||| Sbjct 4095645 AGAAGATCATAGAGCCTATCCAGTCCCGCTGCGCCAT 4095609 >seq1 Length=23539531 Score = 116 bits (128), Expect = 6e-20 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 2071819 GGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTC 2071878 ||||| | ||||||||| || ||| | | ||||||| ||| || || ||| || Sbjct 10004600 GGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATC 10004659 Query 2071879 CACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGG 2071938 |||||| ||||||| |||||||| || || ||||| || ||||| |||||| ||||| Sbjct 10004660 CACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGT 10004719 Query 2071939 TCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 2071998 || || | || | || || | |||||| || ||||| || ||||||||| || | Sbjct 10004720 TCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACCGGGG 10004779 Query 2071999 CGCTTGCCGCCGCC 2072012 ||||||||||| || Sbjct 10004780 CGCTTGCCGCCTCC 10004793 >seq9 Length=20829647 Score = 91.5 bits (100), Expect = 2e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 2035614 GTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCC 2035673 |||||||| ||| | |||||| | || | || || ||||| || ||||||||| | Sbjct 462825 GTCGACCAGGGCACATTGTTTGAGCTTATATTGGCAGCGAACTATCTGGACATCAAGGGC 462884 Query 2035674 CTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGAC 2035733 ||||| || | |||||||| || || ||| | || ||||| ||| | |||||||| Sbjct 462885 CTCCTGGAGCTCACCTGCAAGACTGTTGCAAACATGATTAAGGGAAAGACTCCCGAGGAA 462944 Query 2035734 ATCCGCAAGACCTTTAACATCAA 2035756 || ||||||||||| ||||| || Sbjct 462945 ATACGCAAGACCTTCAACATTAA 462967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915435932219741