Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 2e-28
seq3570 129 4e-25
seq9 129 4e-25
seq4 114 8e-21
seq671 98.7 6e-16
>seq1
Length=23539531
Score = 140 bits (154), Expect = 2e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||||||||||||||| || ||| |||| ||||
Sbjct 10088927 AGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCT 10088868
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| || ||||||||||| || ||||| ||| | || | || || |||||
Sbjct 10088867 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 10088808
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | | || | || | ||||| |||| || ||||||
Sbjct 10088807 TGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTC 10088748
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| |||||||||||||| || |||||||||||
Sbjct 10088747 TTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 10088716
Score = 123 bits (136), Expect = 2e-23
Identities = 157/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||| ||||| ||||| || || |||| ||||
Sbjct 4075127 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 4075068
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| |||||||||||||| || ||||| ||| | || | |||||||| ||
Sbjct 4075067 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCC 4075008
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || ||||| || || || | ||| | ||| || || | ||| ||||
Sbjct 4075007 TGGATCTTAGCCTTGAC--ATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGG 4074950
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| || |||||||| || || |||||||||||
Sbjct 4074949 TCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916
>seq3570
Length=216
Score = 129 bits (142), Expect = 4e-25
Identities = 155/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 34768 GACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827
||||| ||||| ||| ||||||||| ||||| ||||| || || |||| | || ||
Sbjct 216 GACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTC 157
Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887
||| ||||||||||||||||||| || ||||| ||| | || | ||||||||||| |
Sbjct 156 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 97
Query 34888 TATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTT 34947
|| || |||||| | || | || | |||||| || | ||| ||||||||
Sbjct 96 GATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTT 37
Query 34948 TCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| || || ||||| || ||||||||||||
Sbjct 36 GCCAGTCAGAGTCTTCACGAAGATCTGCATG 6
>seq9
Length=20829647
Score = 129 bits (142), Expect = 4e-25
Identities = 160/219 (73%), Gaps = 10/219 (5%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||||| ||||| ||| ||||||||| ||||| ||||| || || |||| | ||
Sbjct 5792255 CAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTC 5792314
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||||||||||||||||| || ||||| ||| | || | |||||||||||
Sbjct 5792315 CTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 5792374
Query 34885 GTTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939
| || || |||||| |||| ||||| | | ||| || || | ||
Sbjct 5792375 CTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAAGTG 5792429
Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|||||||| || || || ||||| || ||||||||||||
Sbjct 5792430 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 5792468
Score = 116 bits (128), Expect = 2e-21
Identities = 156/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||||| ||||| ||| ||||||||| ||||| ||||| || || |||| | ||
Sbjct 5792483 CAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTC 5792542
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| |||||||||||||| |||| || ||||| ||| | || | |||||||||||
Sbjct 5792543 CTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 5792602
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| || || ||||| || || || | || | |||||| || | ||| |||
Sbjct 5792603 CTGGATCTTGGCCTTGAC--ATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATG 5792660
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || || ||||| || || || |||||
Sbjct 5792661 GTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 5792695
>seq4
Length=24153973
Score = 114 bits (126), Expect = 8e-21
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| ||| ||||||||| ||||| || || || ||| |||| | ||
Sbjct 3789616 AGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCT 3789675
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||||||||| |||||||||||||| || ||||| ||| | || | |||||||| ||
Sbjct 3789676 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCC 3789735
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || || | || | ||| || || | || ||||
Sbjct 3789736 TGAATCTTGGCCTTCAC--ATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGG 3789793
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| || ||||| ||||| || |||||||||||
Sbjct 3789794 TCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827
>seq671
Length=216
Score = 98.7 bits (108), Expect = 6e-16
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| ||| ||||||||| ||||| ||||| || || |||| ||||
Sbjct 27 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCC 86
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| |||||||||||||| || ||||| ||| | || | |||||||||||
Sbjct 87 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTC 145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325662557286161
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |