Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1 140 2e-28 seq3570 129 4e-25 seq9 129 4e-25 seq4 114 8e-21 seq671 98.7 6e-16 >seq1 Length=23539531 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||||||||||||||| || ||| |||| |||| Sbjct 10088927 AGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCT 10088868 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||||||||| || ||||| ||| | || | || || ||||| Sbjct 10088867 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 10088808 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | || | ||||| |||| || |||||| Sbjct 10088807 TGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTC 10088748 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| || ||||||||||| Sbjct 10088747 TTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 10088716 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 4075127 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 4075068 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || ||||| ||| | || | |||||||| || Sbjct 4075067 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCC 4075008 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | ||| | ||| || || | ||| |||| Sbjct 4075007 TGGATCTTAGCCTTGAC--ATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGG 4074950 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || |||||||| || || ||||||||||| Sbjct 4074949 TCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916 >seq3570 Length=216 Score = 129 bits (142), Expect = 4e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34768 GACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827 ||||| ||||| ||| ||||||||| ||||| ||||| || || |||| | || || Sbjct 216 GACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTC 157 Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887 ||| ||||||||||||||||||| || ||||| ||| | || | ||||||||||| | Sbjct 156 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 97 Query 34888 TATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTT 34947 || || |||||| | || | || | |||||| || | ||| |||||||| Sbjct 96 GATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTT 37 Query 34948 TCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || ||||| || |||||||||||| Sbjct 36 GCCAGTCAGAGTCTTCACGAAGATCTGCATG 6 >seq9 Length=20829647 Score = 129 bits (142), Expect = 4e-25 Identities = 160/219 (73%), Gaps = 10/219 (5%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| ||||| ||| ||||||||| ||||| ||||| || || |||| | || Sbjct 5792255 CAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTC 5792314 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||||||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 5792315 CTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 5792374 Query 34885 GTTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939 | || || |||||| |||| ||||| | | ||| || || | || Sbjct 5792375 CTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAAGTG 5792429 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||||| || || || ||||| || |||||||||||| Sbjct 5792430 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 5792468 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| ||||| ||| ||||||||| ||||| ||||| || || |||| | || Sbjct 5792483 CAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTC 5792542 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| |||||||||||||| |||| || ||||| ||| | || | ||||||||||| Sbjct 5792543 CTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 5792602 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | || | |||||| || | ||| ||| Sbjct 5792603 CTGGATCTTGGCCTTGAC--ATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATG 5792660 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || || ||||| || || || ||||| Sbjct 5792661 GTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 5792695 >seq4 Length=24153973 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| ||||||||| ||||| || || || ||| |||| | || Sbjct 3789616 AGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCT 3789675 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| |||||||||||||| || ||||| ||| | || | |||||||| || Sbjct 3789676 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCC 3789735 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | ||| || || | || |||| Sbjct 3789736 TGAATCTTGGCCTTCAC--ATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGG 3789793 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || ||||| ||||| || ||||||||||| Sbjct 3789794 TCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827 >seq671 Length=216 Score = 98.7 bits (108), Expect = 6e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 27 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCC 86 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| |||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 87 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTC 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325662557286161