Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4 84.2 2e-11 seq1 82.4 6e-11 >seq4 Length=24153973 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 105081 GGACTGCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCC 105140 || || ||||| || ||||| |||||||| || || | || ||| ||||||| ||| || Sbjct 10848111 GGTCTCCACGGATTCCACGTGCACGAGTTTGGAGACAACACCAATGGCTGCATGTCGTCC 10848052 Query 105141 GGCGAGCACTTCAACCC-TACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAA-AGGC 105198 || |||||||||||| || | || | | ||||||||||| | || || |||| | | Sbjct 10848051 GGACCGCACTTCAACCCGTATG-GCAAGGAGCACGGCGCTCCCGTCGACG-AGAACCGTC 10847994 Query 105199 ACGTCGGCGACCTGGGCAA 105217 || | ||||| |||||||| Sbjct 10847993 ACCTGGGCGATCTGGGCAA 10847975 >seq1 Length=23539531 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || ||||| | || ||||| ||||| ||| | || |||| || Sbjct 4074916 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 4074975 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| ||||| || ||| | ||| |||||| Sbjct 4074976 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAG 4075035 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||| | | || || | ||||||||| Sbjct 4075036 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 4075095 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || ||||| ||||| Sbjct 4075096 ATCCAGAAGGAGTCGACCCTGCACTTGGTG 4075125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398839761671491