Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq4 84.2 2e-11
seq1 82.4 6e-11
>seq4
Length=24153973
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/139 (76%), Gaps = 4/139 (3%)
Strand=Plus/Minus
Query 105081 GGACTGCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCC 105140
|| || ||||| || ||||| |||||||| || || | || ||| ||||||| ||| ||
Sbjct 10848111 GGTCTCCACGGATTCCACGTGCACGAGTTTGGAGACAACACCAATGGCTGCATGTCGTCC 10848052
Query 105141 GGCGAGCACTTCAACCC-TACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAA-AGGC 105198
|| |||||||||||| || | || | | ||||||||||| | || || |||| | |
Sbjct 10848051 GGACCGCACTTCAACCCGTATG-GCAAGGAGCACGGCGCTCCCGTCGACG-AGAACCGTC 10847994
Query 105199 ACGTCGGCGACCTGGGCAA 105217
|| | ||||| ||||||||
Sbjct 10847993 ACCTGGGCGATCTGGGCAA 10847975
>seq1
Length=23539531
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || || || ||||| | || ||||| ||||| ||| | || |||| ||
Sbjct 4074916 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 4074975
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | || || ||||| ||||| || ||| | ||| ||||||
Sbjct 4074976 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAG 4075035
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | || || || ||||||||||| | | || || | |||||||||
Sbjct 4075036 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 4075095
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || |||||||| || ||||| |||||
Sbjct 4075096 ATCCAGAAGGAGTCGACCCTGCACTTGGTG 4075125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398839761671491
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |