Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq5 109 4e-18
seq4 100 2e-15
seq9 89.7 4e-12
>seq5
Length=27160941
Score = 109 bits (120), Expect = 4e-18
Identities = 450/705 (64%), Gaps = 6/705 (1%)
Strand=Plus/Plus
Query 282179 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 282238
|| || ||||| || || || || ||||| |||| | |||| ||| | ||| | |
Sbjct 10158156 GTGACTAGACGGTTGTCGAAGTCCTCACCACCCAGATGCGTATCTCCGGCCGTGGACTTG 10158215
Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298
|| | ||| | || || || | |||| | | ||||| ||| || || |||| |
Sbjct 10158216 ACCTCGAAGATACCGTCATCGATCGACAGGATGGACACATCGAAGGTGCCGCCGCCCAGA 10158275
Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358
|| || ||||| || || ||| | || || || ||||| || || | ||||
Sbjct 10158276 TCGAAGATAAGCACGTTGCGCTCTCCAACAGCCTTCTTGTCCAGACCGTAAGCGATAGCA 10158335
Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418
|| ||||| || || || || || | || ||||| ||||| || || |||| || ||
Sbjct 10158336 GCGGCAGTGGGCTCGTTGATGATACGCAGCACATTCAGACCGGCGATGGTTCCGGCGTCC 10158395
Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478
|| || || || | || || ||||| || || || || || || || || || | ||
Sbjct 10158396 TTGGTCGCCTGACGCTGAGAGTCGTTGAAGTAGGCCGGCACGGTGATGACAGCGTTGGTC 10158455
Query 282479 ACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAA 282538
|| || || | ||| || || || | ||||| || | | | ||| || ||
Sbjct 10158456 ACGGTCTTGCCCAGATAGGCCTCGGCGGTCTCCTTCATCTTGGTGAGCACCATCGAGGAG 10158515
Query 282539 ATTTGTTCTGGAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 282597
|| | || || ||| | | ||| || | | || | || || | | || ||
Sbjct 10158516 ATCTCCTCGGG-GAAGAAGGTCTTCTTCTCGTCCTTGTAGGTCACCTCGATCTTGGGCTT 10158574
Query 282598 ATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG-- 282655
| | | | | || | || ||||| | ||||| || || || ||| ||
Sbjct 10158575 GCCATCGGCGCTGACCACCTCGAAGGGCCAGTGCTTCATGTCAGACTG--CACGGCGGCA 10158632
Query 282656 TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACT 282715
|||| || | | |||||| || || || || || || || || | ||| || || |
Sbjct 10158633 TCATCGAACTTGCGACCAATCAAGCGCTTGGCGTCGAAGATCGTCTGGGTCGGGTTCATC 10158692
Query 282716 GCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATAT 282775
|| | || | ||||| |||||||| |||||| | || || || || || | ||||||
Sbjct 10158693 GCCACCTGGTTCTTGGCGGCATCTCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAG 10158752
Query 282776 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCAT 282835
|||||||| || |||||||| || || || || || || || || || |||| || |
Sbjct 10158753 GATGGAGTGGTACGATTACCCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAAC 10158812
Query 282836 ACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880
|| || || || | || || || ||||||||||||| ||||
Sbjct 10158813 ACGCCCACGCACGAGTAGGTGGTGCCCAAATCAATACCAACAGCA 10158857
>seq4
Length=24153973
Score = 100 bits (110), Expect = 2e-15
Identities = 270/413 (65%), Gaps = 0/413 (0%)
Strand=Plus/Minus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|| |||||||| || || ||||||||||| | ||||| || || || | || || ||
Sbjct 13641493 GCCGTCACATTGAGTATTCCATTGGCATCGATGTCAAAGGTCACCTCCACCTGGGGCACT 13641434
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| | |||| ||||| || | | | ||| | ||||| | || |||||
Sbjct 13641433 CCGCGTGGAGCCGGTGGAATTGCCGAGAGTTCAAACTTACCCAGGCTGTTGTTATCCCGC 13641374
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605
|| | || ||||||||||| | |||||| || | | || || || | ||||
Sbjct 13641373 GTCATCGCCCGCTCACCCTCGAACACCTGGATAAGCACACCTGGCTGGTTGTCCGCATAA 13641314
Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665
|| ||||| | | | || || || || || ||||| || | ||| | |||||
Sbjct 13641313 GTGGTAAAGATTTGCGTTTGCTTGGTGGGTATGGTGGTGTTCCTCTTAATCAGTGTGGTC 13641254
Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725
|| | |||||||| || || | ||| ||||| |||||||||||||| | |||| | |
Sbjct 13641253 ATCACTCCACCAGCGGTCTCAATACCCAGAGACAGAGGAGTGACATCCAGCAGGAGCAGA 13641194
Query 281726 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 281785
| || | | || || | ||| || || || || || | |||||||||||
Sbjct 13641193 TCCTGCACTGCCTCCGATGTATCGCCATGGAGGATGGCAGCCTGCACTGCAGCACCATAG 13641134
Query 281786 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 281838
|| || || ||||| ||||||| | | ||||| | || || ||||| ||
Sbjct 13641133 GCCACCGCCTCATCGGGATTAATGGACTTGTTTAGATCCTTGCCGTTGAAGAA 13641081
>seq9
Length=20829647
Score = 89.7 bits (98), Expect = 4e-12
Identities = 202/300 (67%), Gaps = 4/300 (1%)
Strand=Plus/Plus
Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246
||| | ||| || || ||||||||||| | ||||| || || || || | |||
Sbjct 11066182 ACGCTGATCGAAGTCCTCACCTCCCAAATGAGTATCACCGTTGGTGGCCACCACCTCGAA 11066241
Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306
| ||| | || | | || || | ||||| ||| || || |||| ||| || |
Sbjct 11066242 CACTCCGTTATCGATGGTCAGCAGGGAGACATCGAAGGTGCCGCCGCCCAAATCGAACAC 11066301
Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366
||| || ||| ||| | | | | || || || ||||| || |||| ||| ||||||||
Sbjct 11066302 AAGCACGTTC--TTC-TCGCCCTCCTTCTTGTCCAGACCGTAGGCAATAGCCGCAGCAGT 11066358
Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426
||||| || || || | || || | ||||| ||||| || ||||| || |||||
Sbjct 11066359 GGGTTCGTTGATGATGCGCATCACCTGCAGACCGGCAATCACACCAGCATCCTTGGTGGC 11066418
Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTT 282485
|| | || | |||||| || || || || || |||| ||||||| || | ||||||
Sbjct 11066419 CTGACGCTGGGCATCGTTGAAGTAGGCTGGCACGGTAACGACGGCATGGGTGACCTTCTT 11066478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740256339297894
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |