Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5 109 4e-18 seq4 100 2e-15 seq9 89.7 4e-12 >seq5 Length=27160941 Score = 109 bits (120), Expect = 4e-18 Identities = 450/705 (64%), Gaps = 6/705 (1%) Strand=Plus/Plus Query 282179 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 282238 || || ||||| || || || || ||||| |||| | |||| ||| | ||| | | Sbjct 10158156 GTGACTAGACGGTTGTCGAAGTCCTCACCACCCAGATGCGTATCTCCGGCCGTGGACTTG 10158215 Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298 || | ||| | || || || | |||| | | ||||| ||| || || |||| | Sbjct 10158216 ACCTCGAAGATACCGTCATCGATCGACAGGATGGACACATCGAAGGTGCCGCCGCCCAGA 10158275 Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358 || || ||||| || || ||| | || || || ||||| || || | |||| Sbjct 10158276 TCGAAGATAAGCACGTTGCGCTCTCCAACAGCCTTCTTGTCCAGACCGTAAGCGATAGCA 10158335 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 || ||||| || || || || || | || ||||| ||||| || || |||| || || Sbjct 10158336 GCGGCAGTGGGCTCGTTGATGATACGCAGCACATTCAGACCGGCGATGGTTCCGGCGTCC 10158395 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || || || || | || || ||||| || || || || || || || || || | || Sbjct 10158396 TTGGTCGCCTGACGCTGAGAGTCGTTGAAGTAGGCCGGCACGGTGATGACAGCGTTGGTC 10158455 Query 282479 ACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAA 282538 || || || | ||| || || || | ||||| || | | | ||| || || Sbjct 10158456 ACGGTCTTGCCCAGATAGGCCTCGGCGGTCTCCTTCATCTTGGTGAGCACCATCGAGGAG 10158515 Query 282539 ATTTGTTCTGGAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 282597 || | || || ||| | | ||| || | | || | || || | | || || Sbjct 10158516 ATCTCCTCGGG-GAAGAAGGTCTTCTTCTCGTCCTTGTAGGTCACCTCGATCTTGGGCTT 10158574 Query 282598 ATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG-- 282655 | | | | | || | || ||||| | ||||| || || || ||| || Sbjct 10158575 GCCATCGGCGCTGACCACCTCGAAGGGCCAGTGCTTCATGTCAGACTG--CACGGCGGCA 10158632 Query 282656 TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACT 282715 |||| || | | |||||| || || || || || || || || | ||| || || | Sbjct 10158633 TCATCGAACTTGCGACCAATCAAGCGCTTGGCGTCGAAGATCGTCTGGGTCGGGTTCATC 10158692 Query 282716 GCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATAT 282775 || | || | ||||| |||||||| |||||| | || || || || || | |||||| Sbjct 10158693 GCCACCTGGTTCTTGGCGGCATCTCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAG 10158752 Query 282776 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCAT 282835 |||||||| || |||||||| || || || || || || || || || |||| || | Sbjct 10158753 GATGGAGTGGTACGATTACCCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAAC 10158812 Query 282836 ACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 || || || || | || || || ||||||||||||| |||| Sbjct 10158813 ACGCCCACGCACGAGTAGGTGGTGCCCAAATCAATACCAACAGCA 10158857 >seq4 Length=24153973 Score = 100 bits (110), Expect = 2e-15 Identities = 270/413 (65%), Gaps = 0/413 (0%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 || |||||||| || || ||||||||||| | ||||| || || || | || || || Sbjct 13641493 GCCGTCACATTGAGTATTCCATTGGCATCGATGTCAAAGGTCACCTCCACCTGGGGCACT 13641434 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | |||| ||||| || | | | ||| | ||||| | || ||||| Sbjct 13641433 CCGCGTGGAGCCGGTGGAATTGCCGAGAGTTCAAACTTACCCAGGCTGTTGTTATCCCGC 13641374 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | || ||||||||||| | |||||| || | | || || || | |||| Sbjct 13641373 GTCATCGCCCGCTCACCCTCGAACACCTGGATAAGCACACCTGGCTGGTTGTCCGCATAA 13641314 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 || ||||| | | | || || || || || ||||| || | ||| | ||||| Sbjct 13641313 GTGGTAAAGATTTGCGTTTGCTTGGTGGGTATGGTGGTGTTCCTCTTAATCAGTGTGGTC 13641254 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 || | |||||||| || || | ||| ||||| |||||||||||||| | |||| | | Sbjct 13641253 ATCACTCCACCAGCGGTCTCAATACCCAGAGACAGAGGAGTGACATCCAGCAGGAGCAGA 13641194 Query 281726 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 281785 | || | | || || | ||| || || || || || | ||||||||||| Sbjct 13641193 TCCTGCACTGCCTCCGATGTATCGCCATGGAGGATGGCAGCCTGCACTGCAGCACCATAG 13641134 Query 281786 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 281838 || || || ||||| ||||||| | | ||||| | || || ||||| || Sbjct 13641133 GCCACCGCCTCATCGGGATTAATGGACTTGTTTAGATCCTTGCCGTTGAAGAA 13641081 >seq9 Length=20829647 Score = 89.7 bits (98), Expect = 4e-12 Identities = 202/300 (67%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||| | ||| || || ||||||||||| | ||||| || || || || | ||| Sbjct 11066182 ACGCTGATCGAAGTCCTCACCTCCCAAATGAGTATCACCGTTGGTGGCCACCACCTCGAA 11066241 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | ||| | || | | || || | ||||| ||| || || |||| ||| || | Sbjct 11066242 CACTCCGTTATCGATGGTCAGCAGGGAGACATCGAAGGTGCCGCCGCCCAAATCGAACAC 11066301 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 ||| || ||| ||| | | | | || || || ||||| || |||| ||| |||||||| Sbjct 11066302 AAGCACGTTC--TTC-TCGCCCTCCTTCTTGTCCAGACCGTAGGCAATAGCCGCAGCAGT 11066358 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 ||||| || || || | || || | ||||| ||||| || ||||| || ||||| Sbjct 11066359 GGGTTCGTTGATGATGCGCATCACCTGCAGACCGGCAATCACACCAGCATCCTTGGTGGC 11066418 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTT 282485 || | || | |||||| || || || || || |||| ||||||| || | |||||| Sbjct 11066419 CTGACGCTGGGCATCGTTGAAGTAGGCTGGCACGGTAACGACGGCATGGGTGACCTTCTT 11066478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740256339297894