Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 159 7e-34 seq671 125 1e-23 >seq1 Length=23539531 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || || || || ||||||||||| || || ||||| || ||||| ||||| Sbjct 10088943 ACCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGA 10088884 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || || || ||||| ||||| || | || ||||||||||| Sbjct 10088883 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 10088824 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| || || |||||||| ||||| |||||||| || ||||| ||||| || Sbjct 10088823 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGAC 10088764 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| || | ||||| || || |||||||| Sbjct 10088763 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 10088716 >seq671 Length=216 Score = 125 bits (138), Expect = 1e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| ||||| || || || || ||||| || || || |||| Sbjct 10 TACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAG 69 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || || || || || || ||||| || | || |||||||||| Sbjct 70 AAAGAGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAG 129 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| ||||| ||||| || || ||||| ||||| || || || || | Sbjct 130 GAATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAA 189 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCA 82788 |||||| || || ||||| || |||| Sbjct 190 CTTCCAGGGTGATGGTCTTTCCGGTCA 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981731355562841