Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq4 107 1e-18
seq9 102 5e-17
seq1 102 5e-17
seq3570 93.3 3e-14
>seq4
Length=24153973
Score = 107 bits (118), Expect = 1e-18
Identities = 156/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| | |||||| || || || ||| || || |||||||||||||| || |||||| |
Sbjct 3789612 ACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCC 3789671
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
||| |||| ||| || ||||| || |||| ||||||||||||| | || | || || ||
Sbjct 3789672 GTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTT 3789731
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712
|| ||| || ||| |||| || | |||||| || || || || | ||||
Sbjct 3789732 ATCCTGAATCTTGGCCTTC-ACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGA 3789790
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || || || | || || || ||||||||||||
Sbjct 3789791 TGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCATA 3789828
>seq9
Length=20829647
Score = 102 bits (112), Expect = 5e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || ||| | ||||| || || || ||| || || |||||||| |||||
Sbjct 5792469 CCACCACGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5792528
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| |||| |||| || |||||||| ||||||||||||||||||||| | ||
Sbjct 5792529 AGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGG 5792588
Query 33643 ACACCTTCTTTGTC 33656
| || || |||||
Sbjct 5792589 ATTCCCTCCTTGTC 5792602
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || ||| | ||||| || || || ||| || || |||||||| |||||
Sbjct 5792241 CCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5792300
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| |||| |||| || |||||||| || |||||||||||||||||| | ||
Sbjct 5792301 AGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 5792360
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || || | | | || | ||| ||| || || ||
Sbjct 5792361 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTCTCGATGGTATCGGATGGCTCAAC 5792419
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || || |||||||||||
Sbjct 5792420 CTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 5792467
>seq1
Length=23539531
Score = 102 bits (112), Expect = 5e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | || || | |||||| || |||||| ||| || || ||||| || || |
Sbjct 10088944 CACCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAG 10088885
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
|||| ||||| | || |||| || || || || || |||| ||||||||||||| | |
Sbjct 10088884 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAG 10088825
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||||||||| ||| || | || |||| || | || || | |||
Sbjct 10088824 GAATTCCTTCTTTGTCCTGAATCTT-GGCTTTGACATTTTCGATAGTATCCGACGGTTCG 10088766
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| ||||| || || || || | || || || |||||||||||
Sbjct 10088765 ACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 10088716
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || || | |||||| || || || ||| || || |||||||| |||||
Sbjct 4075143 ACCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 4075084
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| | || |||| || || ||||| || |||| ||||||||||||| | ||
Sbjct 4075083 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 4075024
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || || || || || | | |||| || | |||||| | ||||
Sbjct 4075023 AATGCCCTCCTTATCCTGGATCTT-AGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCA 4074965
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
| || | ||||| || || || || | ||||| || ||||||||||||||
Sbjct 4074964 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATAGT 4074913
>seq3570
Length=216
Score = 93.3 bits (102), Expect = 3e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
||||| || || || ||| || || |||||||| ||||| || |||||| |||| |||
Sbjct 215 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 156
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656
| || |||||||| || |||||||||||||||||| | || | || || |||||
Sbjct 155 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328673477676480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |