Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 107 5e-18 seq4 98.7 2e-15 seq9 89.7 1e-12 seq671 87.8 4e-12 >seq1 Length=23539531 Score = 107 bits (118), Expect = 5e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||| ||||| ||||||||| |||| Sbjct 4074931 AAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCTGACACCATCGAGAAT 4074990 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || || || | || |||||| Sbjct 4074991 GTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 4075050 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| || |||| |||||| ||||||| ||||| Sbjct 4075051 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 4075110 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 4075111 ACCCTGCAC 4075119 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| | || || ||| || || || ||||| Sbjct 10088731 AAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGATACTATCGAAAAT 10088790 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || |||||||||||| || || || | || ||||| Sbjct 10088791 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 10088849 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||||||||| | || | | || || ||| | ||||| ||||| Sbjct 10088850 CGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAGTC 10088909 Query 206364 TACTCTTCAC 206373 ||||| ||| Sbjct 10088910 CACTCTGCAC 10088919 >seq4 Length=24153973 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||||||||| || || || ||||| | || Sbjct 3789812 AAGACTCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCGGACACCATTGAGAAT 3789753 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || ||||| || || || | || |||||| Sbjct 3789752 GTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAGCAGCGTCTGATCTTC 3789693 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| ||||||| ||| | || || ||||||||||| ||||||| ||||| Sbjct 3789692 GCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCA 3789633 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 3789632 ACCCTTCAC 3789624 >seq9 Length=20829647 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||||||||| || || || || || |||| Sbjct 5792452 AAGACTCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCCGATACCATCGAGAAC 5792393 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || || || | | |||||| Sbjct 5792392 GTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAGCGTTTGATCTTC 5792333 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| || ||| | ||| || |||| |||||| ||||||| ||||| Sbjct 5792332 GCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 5792273 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 5792272 ACCCTTCAC 5792264 >seq671 Length=216 Score = 87.8 bits (96), Expect = 4e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| ||||||| || || ||||| | || || ||| Sbjct 214 ACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCAGACACCATTGAGAATGTGAAGGCT 155 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || |||||| || || || | || ||||||||||| ||| Sbjct 154 AAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 95 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || |||||| | ||| | | || |||||| ||||||| ||||| || |||||| Sbjct 94 CAGCTCGAGGATGGACGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTTCAC 35 Query 206374 CTTGTT 206379 | ||| Sbjct 34 TTGGTT 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181705432500099