Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 5e-18
seq4 98.7 2e-15
seq9 89.7 1e-12
seq671 87.8 4e-12
>seq1
Length=23539531
Score = 107 bits (118), Expect = 5e-18
Identities = 137/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || || || ||||| ||||| ||||| ||||||||| ||||
Sbjct 4074931 AAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCTGACACCATCGAGAAT 4074990
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || || ||| || || || | || ||||||
Sbjct 4074991 GTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 4075050
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||| ||||| | ||| || |||| |||||| ||||||| |||||
Sbjct 4075051 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 4075110
Query 206365 ACTCTTCAC 206373
|| || |||
Sbjct 4075111 ACCCTGCAC 4075119
Score = 87.8 bits (96), Expect = 4e-12
Identities = 135/190 (71%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || || || |||||| | || || ||| || || || |||||
Sbjct 10088731 AAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGATACTATCGAAAAT 10088790
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || |||||| || |||||||||||| || || || | || |||||
Sbjct 10088791 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 10088849
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| || |||||| |||||||||| | || | | || || ||| | ||||| |||||
Sbjct 10088850 CGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAGTC 10088909
Query 206364 TACTCTTCAC 206373
||||| |||
Sbjct 10088910 CACTCTGCAC 10088919
>seq4
Length=24153973
Score = 98.7 bits (108), Expect = 2e-15
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || || || ||||||||||| || || || ||||| | ||
Sbjct 3789812 AAGACTCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCGGACACCATTGAGAAT 3789753
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| |||||||| || || || ||||| || || || | || ||||||
Sbjct 3789752 GTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAGCAGCGTCTGATCTTC 3789693
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| ||||| ||||||| ||| | || || ||||||||||| ||||||| |||||
Sbjct 3789692 GCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCA 3789633
Query 206365 ACTCTTCAC 206373
|| ||||||
Sbjct 3789632 ACCCTTCAC 3789624
>seq9
Length=20829647
Score = 89.7 bits (98), Expect = 1e-12
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || ||||||||||| || || || || || ||||
Sbjct 5792452 AAGACTCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCCGATACCATCGAGAAC 5792393
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || ||||| || || || | | ||||||
Sbjct 5792392 GTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAGCGTTTGATCTTC 5792333
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|||||||||||| |||| || ||| | ||| || |||| |||||| ||||||| |||||
Sbjct 5792332 GCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 5792273
Query 206365 ACTCTTCAC 206373
|| ||||||
Sbjct 5792272 ACCCTTCAC 5792264
>seq671
Length=216
Score = 87.8 bits (96), Expect = 4e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| ||||| || ||||| ||||||| || || ||||| | || || |||
Sbjct 214 ACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCAGACACCATTGAGAATGTGAAGGCT 155
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| || || |||||| || || || | || ||||||||||| |||
Sbjct 154 AAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 95
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| | || |||||| | ||| | | || |||||| ||||||| ||||| || ||||||
Sbjct 94 CAGCTCGAGGATGGACGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTTCAC 35
Query 206374 CTTGTT 206379
| |||
Sbjct 34 TTGGTT 29
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181705432500099
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |