Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 347 1e-90 seq4 131 2e-25 seq9 86.0 6e-12 seq3570 82.4 7e-11 >seq1 Length=23539531 Score = 347 bits (384), Expect = 1e-90 Identities = 1195/1839 (65%), Gaps = 42/1839 (2%) Strand=Plus/Plus Query 146571 CGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTG 146630 ||| || || || ||||||| ||| ||||| || ||||| || || | ||| |||| Sbjct 10003423 CGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTAAGACCTGCTTTCCAGGAGTA 10003482 Query 146631 ATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTG 146690 | ||| || ||||||| | | || | ||||| ||||| | || ||||| || Sbjct 10003483 AAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTCGGCCACATGTATGTTGAACGACTG 10003542 Query 146691 GCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTC-A 146749 || ||||||||||| || || ||||| ||||| | |||| || | ||| || | Sbjct 10003543 ACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTTAATCGTG-GACTTGACTGAGA 10003601 Query 146750 TTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAA 146809 ||||||| | || |||||||| | || | | || || ||||||||||||| Sbjct 10003602 TTTCCCACACCGTCTTGTACAGATCTCGCACCTTCTGGGGTATGGTCTCAATGTTTTGAA 10003661 Query 146810 TAGAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGGCGTGTAA-AGGTTTAGTTT 146867 | || ||| || || | || || ||| | || ||| ||| | | || |||| Sbjct 10003662 TCGATCCCCTGCTCGATATGATC-TGGTTCTTCATGTCGT-CGTCCCACAAGTCCAGTTC 10003719 Query 146868 AATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCT 146927 | ||||| | |||| || |||||||| || || ||||| | ||| || || | Sbjct 10003720 GGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCG 10003779 Query 146928 GAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGT 146987 | || | || | ||| | ||||| || || ||||| ||||| | ||| || || || Sbjct 10003780 GGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGT 10003839 Query 146988 GGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTT 147047 | ||| || |||||| || || | || ||| || || | ||||| | ||| Sbjct 10003840 AGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGA 10003899 Query 147048 GTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTG 147107 |||||||| | ||||||||||||| || ||| | || ||||||||||||||| Sbjct 10003900 CTCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTG 10003959 Query 147108 GAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGC 147167 | | |||| || | || ||||| || | || ||| || ||| ||| || Sbjct 10003960 CAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGC 10004019 Query 147168 CAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG 147227 || ||| ||||| || || | || |||||||| || ||||| || || | || | Sbjct 10004020 CAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAA 10004079 Query 147228 GACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACC 147287 || ||||||||||| ||||| || | ||||| || | |||||||| || || || Sbjct 10004080 GAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCC 10004139 Query 147288 CTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTG--CTGCGCTTCGCGCTCGCTATG 147345 ||| ||||| | ||| | || |||||| | ||| || | ||| | || || | Sbjct 10004140 CTGAATACCAATGCCCACGGGACGATGCCTCAAATTGGACTTC-CTTGCCTCTGGC-AGC 10004197 Query 147346 GGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTT 147405 ||||| | ||| |||||| |||||||| || || || | || || | | Sbjct 10004198 GGATAATAATTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACTTCC 10004257 Query 147406 TTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATA 147465 ||||| |||| ||||||||| ||| ||| || | | ||| | ||| | |||||| Sbjct 10004258 TTGAGCTTCTTGAAATCATACGTCT--TCTCCGGCGTG-ACGAACATGTTGAGGGCGATG 10004314 Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCAC 147525 || |||| |||||||| || |||| || | | || | |||||||| | |||| Sbjct 10004315 GAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCAC 10004374 Query 147526 AGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCT 147585 | ||||||||| || ||| || | ||| ||||| ||||| |||| ||||| ||||| Sbjct 10004375 AAGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10004434 Query 147586 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGC 147642 ||||||||||||||||| |||||||| ||||||| |||| ||| ||||| | Sbjct 10004435 TTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACC---AC 10004491 Query 147643 AGGTCCTGCGCTCGCACCCGCTGCCGATAG--CGGCCCTCGTTTTCGTACCGCTCGTACA 147700 ||| || || | | ||| | | | | | || ||||| | ||||| |||||||| Sbjct 10004492 AGGGATTGAGC-CTTAACCG-TTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACA 10004549 Query 147701 ACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCA 147760 | || || || ||||| | ||| || || ||||||| || || ||||| | Sbjct 10004550 GCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCACATGA 10004609 Query 147761 GCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGT 147820 ||||||| ||| || | |||||| ||| || ||||| || | |||||| |||| Sbjct 10004610 GCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGT 10004669 Query 147821 ACATAAGATCGCGCGCTTTGCAATCCTCGGC---GCCCATGTTGCGTTTCAAATTAAGCA 147877 | | |||||||| || || || ||| | |||| |||| |||| | || | Sbjct 10004670 AAAACAGATCGCGTGC---GCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGA 10004726 Query 147878 CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTC 147937 | ||| || | |||||||||||| | || | ||| | ||||| ||||| | Sbjct 10004727 ACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACCGGGGCGCTTGC 10004786 Query 147938 CG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGC 147994 || ||||| || |||| || ||| || ||||| || | || |||||| ||| | Sbjct 10004787 CGCCTCCCTGATCCACATAACGAGCCACATTATTAAAGACCCTCAGCATGGGAACCAACC 10004846 Query 147995 CGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGT 148054 | | | ||| || || ||| ||| | |||| || || | ||||||| Sbjct 10004847 CATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATGCAATGCACGT 10004906 Query 148055 TAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGA 148114 | | || ||||| ||| || |||| || || ||||| | ||| | | || | | Sbjct 10004907 TGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGACTTGAAAA 10004966 Query 148115 TGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCC 148174 |||| |||||| |||| | | | || | |||||||| ||| ||||| || Sbjct 10004967 TGCCCTCGATGGAGTCGGCCGTCATGGTCAGAAGGAAACACGACGACAACTGCGG---CC 10005023 Query 148175 G---CGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTTTGACTCAT 148229 | || | || | || || ||||| || || || || | | ||| | Sbjct 10005024 GGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGTGTGAAGTAGCGCTCCGACAGAA 10005083 Query 148230 CATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCG 148289 || ||| || || | || | ||||| || || || || || || | ||| ||||| Sbjct 10005084 GAT--TATAGGTTTCCACGGCTGCATCGATATCCTCTCCATGGATTCCGATCGCCACGCG 10005141 Query 148290 CATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATT 148349 ||| ||||| ||||| ||||| || || | | ||| ||||||| ||||| | Sbjct 10005142 CATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCTCTTGAGCAGATAGGAACG 10005201 Query 148350 TTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATC 148388 || ||||| ||| | ||||| || || || |||| || Sbjct 10005202 CTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAAGTC 10005240 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | ||||| || | | ||||| || |||||||| ||||| | ||| Sbjct 10088937 ACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 10088878 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | |||| |||||||| ||||||||||| || || Sbjct 10088877 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 10088818 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||| || ||| | | ||| | |||||| | ||| || || || | Sbjct 10088817 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAG 10088758 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || | ||| |||||||| Sbjct 10088757 AGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 10088716 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | ||||| || | | | ||||| || || |||||||||||| || || Sbjct 4075137 ACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 4075078 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || |||| |||| |||||||| |||||||| || ||||| Sbjct 4075077 GCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCC 4075018 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| || || || | | || | || || | |||||||| || | Sbjct 4075017 CTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAA 4074958 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || ||||| | ||| |||||||| Sbjct 4074957 GGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916 >seq4 Length=24153973 Score = 131 bits (144), Expect = 2e-25 Identities = 232/338 (69%), Gaps = 3/338 (1%) Strand=Plus/Plus Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600 |||| || || | ||||||||||| || | || | ||||||||| | |||||||||| Sbjct 10847778 CAATGCCAATAACGCCGCAGCCGATGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCT 10847837 Query 51601 GATGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGA 51660 || | |||| ||||| ||| | ||||| || || | |||| || | || Sbjct 10847838 CGTGTCCACCCTGGCCAAGATCATCGGCATCGGCGTGCACGACAACGGTGCGTCCGATGA 10847897 Query 51661 CGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGT 51720 ||| | ||||||| ||||| ||| | |||| | ||| || | |||| || || Sbjct 10847898 TGCTGTCGGCGCCGAAGAGCGTGATCTTGGAGTCGGTGATGTTGACCTTGGTGGGGCAGT 10847957 Query 51721 TGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAG 51780 | | | ||||| | ||||||| ||||| | ||| || || | || |||| Sbjct 10847958 CGC---CGGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGACGGTTCTCGTCGACGGGAG 10848014 Query 51781 CGCCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGG 51840 ||||||| || |||| ||||||||||| || | |||| ||||||| ||| || Sbjct 10848015 CGCCGTGCTCCTTGCCATACGGGTTGAAGTGCGGTCCGGACGACATGCAGCCATTGGTGT 10848074 Query 51841 TGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878 |||| || || |||||||||||||||||||| || ||| Sbjct 10848075 TGTCTCCAAACTCGTGCACGTGGAATCCGTGGAGACCC 10848112 >seq9 Length=20829647 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| ||||| || | | | ||||| || || |||||||||||| || || Sbjct 5792247 CGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 5792306 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || |||| |||| | |||||| |||||||| || || || Sbjct 5792307 CGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCC 5792366 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || | | || | ||||||| ||||| || || | Sbjct 5792367 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAA 5792426 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||||||| || | ||| ||||||||| Sbjct 5792427 GTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 5792468 >seq3570 Length=216 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || |||||||||||| || || || || || Sbjct 215 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 156 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| |||| | |||||| |||||||| || || || || || || Sbjct 155 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 96 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | ||||||| ||||| || || | || | || || Sbjct 95 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 36 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||||||||| || | ||| ||||||||| Sbjct 35 CCAGTCAGAGTCTTCACGAAGATCTGCATG 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476565808740840