Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq1 347 1e-90
seq4 131 2e-25
seq9 86.0 6e-12
seq3570 82.4 7e-11
>seq1
Length=23539531
Score = 347 bits (384), Expect = 1e-90
Identities = 1195/1839 (65%), Gaps = 42/1839 (2%)
Strand=Plus/Plus
Query 146571 CGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTG 146630
||| || || || ||||||| ||| ||||| || ||||| || || | ||| ||||
Sbjct 10003423 CGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTAAGACCTGCTTTCCAGGAGTA 10003482
Query 146631 ATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTG 146690
| ||| || ||||||| | | || | ||||| ||||| | || ||||| ||
Sbjct 10003483 AAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTCGGCCACATGTATGTTGAACGACTG 10003542
Query 146691 GCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTC-A 146749
|| ||||||||||| || || ||||| ||||| | |||| || | ||| || |
Sbjct 10003543 ACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTTAATCGTG-GACTTGACTGAGA 10003601
Query 146750 TTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAA 146809
||||||| | || |||||||| | || | | || || |||||||||||||
Sbjct 10003602 TTTCCCACACCGTCTTGTACAGATCTCGCACCTTCTGGGGTATGGTCTCAATGTTTTGAA 10003661
Query 146810 TAGAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGGCGTGTAA-AGGTTTAGTTT 146867
| || ||| || || | || || ||| | || ||| ||| | | || ||||
Sbjct 10003662 TCGATCCCCTGCTCGATATGATC-TGGTTCTTCATGTCGT-CGTCCCACAAGTCCAGTTC 10003719
Query 146868 AATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCT 146927
| ||||| | |||| || |||||||| || || ||||| | ||| || || |
Sbjct 10003720 GGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCG 10003779
Query 146928 GAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGT 146987
| || | || | ||| | ||||| || || ||||| ||||| | ||| || || ||
Sbjct 10003780 GGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGT 10003839
Query 146988 GGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTT 147047
| ||| || |||||| || || | || ||| || || | ||||| | |||
Sbjct 10003840 AGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGA 10003899
Query 147048 GTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTG 147107
|||||||| | ||||||||||||| || ||| | || |||||||||||||||
Sbjct 10003900 CTCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTG 10003959
Query 147108 GAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGC 147167
| | |||| || | || ||||| || | || ||| || ||| ||| ||
Sbjct 10003960 CAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGC 10004019
Query 147168 CAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG 147227
|| ||| ||||| || || | || |||||||| || ||||| || || | || |
Sbjct 10004020 CAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAA 10004079
Query 147228 GACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACC 147287
|| ||||||||||| ||||| || | ||||| || | |||||||| || || ||
Sbjct 10004080 GAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCC 10004139
Query 147288 CTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTG--CTGCGCTTCGCGCTCGCTATG 147345
||| ||||| | ||| | || |||||| | ||| || | ||| | || || |
Sbjct 10004140 CTGAATACCAATGCCCACGGGACGATGCCTCAAATTGGACTTC-CTTGCCTCTGGC-AGC 10004197
Query 147346 GGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTT 147405
||||| | ||| |||||| |||||||| || || || | || || | |
Sbjct 10004198 GGATAATAATTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACTTCC 10004257
Query 147406 TTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATA 147465
||||| |||| ||||||||| ||| ||| || | | ||| | ||| | ||||||
Sbjct 10004258 TTGAGCTTCTTGAAATCATACGTCT--TCTCCGGCGTG-ACGAACATGTTGAGGGCGATG 10004314
Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCAC 147525
|| |||| |||||||| || |||| || | | || | |||||||| | ||||
Sbjct 10004315 GAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCAC 10004374
Query 147526 AGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCT 147585
| ||||||||| || ||| || | ||| ||||| ||||| |||| ||||| |||||
Sbjct 10004375 AAGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10004434
Query 147586 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGC 147642
||||||||||||||||| |||||||| ||||||| |||| ||| ||||| |
Sbjct 10004435 TTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACC---AC 10004491
Query 147643 AGGTCCTGCGCTCGCACCCGCTGCCGATAG--CGGCCCTCGTTTTCGTACCGCTCGTACA 147700
||| || || | | ||| | | | | | || ||||| | ||||| ||||||||
Sbjct 10004492 AGGGATTGAGC-CTTAACCG-TTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACA 10004549
Query 147701 ACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCA 147760
| || || || ||||| | ||| || || ||||||| || || ||||| |
Sbjct 10004550 GCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCACATGA 10004609
Query 147761 GCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGT 147820
||||||| ||| || | |||||| ||| || ||||| || | |||||| ||||
Sbjct 10004610 GCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGT 10004669
Query 147821 ACATAAGATCGCGCGCTTTGCAATCCTCGGC---GCCCATGTTGCGTTTCAAATTAAGCA 147877
| | |||||||| || || || ||| | |||| |||| |||| | || |
Sbjct 10004670 AAAACAGATCGCGTGC---GCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGA 10004726
Query 147878 CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTC 147937
| ||| || | |||||||||||| | || | ||| | ||||| ||||| |
Sbjct 10004727 ACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACCGGGGCGCTTGC 10004786
Query 147938 CG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGC 147994
|| ||||| || |||| || ||| || ||||| || | || |||||| ||| |
Sbjct 10004787 CGCCTCCCTGATCCACATAACGAGCCACATTATTAAAGACCCTCAGCATGGGAACCAACC 10004846
Query 147995 CGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGT 148054
| | | ||| || || ||| ||| | |||| || || | |||||||
Sbjct 10004847 CATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATGCAATGCACGT 10004906
Query 148055 TAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGA 148114
| | || ||||| ||| || |||| || || ||||| | ||| | | || | |
Sbjct 10004907 TGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGACTTGAAAA 10004966
Query 148115 TGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCC 148174
|||| |||||| |||| | | | || | |||||||| ||| ||||| ||
Sbjct 10004967 TGCCCTCGATGGAGTCGGCCGTCATGGTCAGAAGGAAACACGACGACAACTGCGG---CC 10005023
Query 148175 G---CGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTTTGACTCAT 148229
| || | || | || || ||||| || || || || | | ||| |
Sbjct 10005024 GGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGTGTGAAGTAGCGCTCCGACAGAA 10005083
Query 148230 CATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCG 148289
|| ||| || || | || | ||||| || || || || || || | ||| |||||
Sbjct 10005084 GAT--TATAGGTTTCCACGGCTGCATCGATATCCTCTCCATGGATTCCGATCGCCACGCG 10005141
Query 148290 CATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATT 148349
||| ||||| ||||| ||||| || || | | ||| ||||||| ||||| |
Sbjct 10005142 CATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCTCTTGAGCAGATAGGAACG 10005201
Query 148350 TTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATC 148388
|| ||||| ||| | ||||| || || || |||| ||
Sbjct 10005202 CTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAAGTC 10005240
Score = 98.7 bits (108), Expect = 9e-16
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||| | ||||| || | | ||||| || |||||||| ||||| | |||
Sbjct 10088937 ACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 10088878
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| |||||| ||||| || || | |||| |||||||| ||||||||||| || ||
Sbjct 10088877 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 10088818
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|||||| || ||| || ||| | | ||| | |||||| | ||| || || || |
Sbjct 10088817 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAG 10088758
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || || || || || || | ||| ||||||||
Sbjct 10088757 AGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 10088716
Score = 89.7 bits (98), Expect = 5e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||| | ||||| || | | | ||||| || || |||||||||||| || ||
Sbjct 4075137 ACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 4075078
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| ||| || ||||| || |||| |||| |||||||| |||||||| || |||||
Sbjct 4075077 GCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCC 4075018
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| ||||| || || || | | || | || || | |||||||| || |
Sbjct 4075017 CTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAA 4074958
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || || || || ||||| | ||| ||||||||
Sbjct 4074957 GGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916
>seq4
Length=24153973
Score = 131 bits (144), Expect = 2e-25
Identities = 232/338 (69%), Gaps = 3/338 (1%)
Strand=Plus/Plus
Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600
|||| || || | ||||||||||| || | || | ||||||||| | ||||||||||
Sbjct 10847778 CAATGCCAATAACGCCGCAGCCGATGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCT 10847837
Query 51601 GATGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGA 51660
|| | |||| ||||| ||| | ||||| || || | |||| || | ||
Sbjct 10847838 CGTGTCCACCCTGGCCAAGATCATCGGCATCGGCGTGCACGACAACGGTGCGTCCGATGA 10847897
Query 51661 CGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGT 51720
||| | ||||||| ||||| ||| | |||| | ||| || | |||| || ||
Sbjct 10847898 TGCTGTCGGCGCCGAAGAGCGTGATCTTGGAGTCGGTGATGTTGACCTTGGTGGGGCAGT 10847957
Query 51721 TGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAG 51780
| | | ||||| | ||||||| ||||| | ||| || || | || ||||
Sbjct 10847958 CGC---CGGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGACGGTTCTCGTCGACGGGAG 10848014
Query 51781 CGCCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGG 51840
||||||| || |||| ||||||||||| || | |||| ||||||| ||| ||
Sbjct 10848015 CGCCGTGCTCCTTGCCATACGGGTTGAAGTGCGGTCCGGACGACATGCAGCCATTGGTGT 10848074
Query 51841 TGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878
|||| || || |||||||||||||||||||| || |||
Sbjct 10848075 TGTCTCCAAACTCGTGCACGTGGAATCCGTGGAGACCC 10848112
>seq9
Length=20829647
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| |||| ||||| || | | | ||||| || || |||||||||||| || ||
Sbjct 5792247 CGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 5792306
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| || || ||||| || |||| |||| | |||||| |||||||| || || ||
Sbjct 5792307 CGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCC 5792366
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || || || || | | || | ||||||| ||||| || || |
Sbjct 5792367 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAA 5792426
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | || || ||||||||||| || | ||| |||||||||
Sbjct 5792427 GTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 5792468
>seq3570
Length=216
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | ||||| || || |||||||||||| || || || || ||
Sbjct 215 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 156
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||| || |||| |||| | |||||| |||||||| || || || || || ||
Sbjct 155 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 96
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| || || | | || | ||||||| ||||| || || | || | || ||
Sbjct 95 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 36
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
||||||||||| || | ||| |||||||||
Sbjct 35 CCAGTCAGAGTCTTCACGAAGATCTGCATG 6
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476565808740840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |