Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 6e-12 >seq1 Length=23539531 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 5333 AGAAGCACTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTC---- 5388 ||| || |||||| |||| ||| || | ||||||||| || |||| | || || Sbjct 10669137 AGATGCGCTCGCAAATGAACTGGGCGATGCGGTCGCCATGCTTCACCTCAAAA-TCAACA 10669079 Query 5389 TCTTGGCCGAAGTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACG 5448 ||| | || |||||||| || || || || || || || | ||| ||| || || Sbjct 10669078 TCTGAGT-GA--TTGAAGAGGACGACGCCGAGATTGCCGCGATAATCCTCGTCGACCACA 10669022 Query 5449 CCCGCTCCCACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCG 5508 || || |||||||| | |||||| || ||||| || ||||| | || || ||||| ||| Sbjct 10669021 CCGGCGCCCACATCAATGAAGTTCTTCACCGCTAGCCCGGATCGTGGGGCTACGCGTCCG 10668962 Query 5509 TAGCAGCCGTATGGCGGGTGGATCTGCAGATCGGTC 5544 ||| |||| | || || | |||||||||||| Sbjct 10668961 TAGGAGCCCTCCGGAACCTGCACTTGCAGATCGGTC 10668926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447768551580840