Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq5 102 3e-18
seq9 100 9e-18
seq2 98.7 3e-17
seq1 98.7 3e-17
>seq5
Length=27160941
Score = 102 bits (112), Expect = 3e-18
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 9103662 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAA 9103603
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 9103602 TCCCGGGTTTCGGC 9103589
Score = 100 bits (110), Expect = 9e-18
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825
|| || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 9103306 ATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCA 9103247
Query 2826 ACCCCGGGCTTCAGC 2840
| |||||| ||| ||
Sbjct 9103246 ATCCCGGGTTTCGGC 9103232
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 11554779 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 11554838
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 11554839 CCGGGTTTCGGC 11554850
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 11555079 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 11555020
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 11555019 CCGGGTTTCGGC 11555008
>seq9
Length=20829647
Score = 100 bits (110), Expect = 9e-18
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825
|| || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 6014245 ATTGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCA 6014304
Query 2826 ACCCCGGGCTTCAGC 2840
| |||||| ||| ||
Sbjct 6014305 ATCCCGGGTTTCGGC 6014319
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 6230941 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 6230882
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 6230881 CCGGGTTTCGGC 6230870
>seq2
Length=21544594
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 14139623 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 14139564
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 14139563 CCGGGTTTCGGC 14139552
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 14139775 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 14139834
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 14139835 CCGGGTTTCGGC 14139846
>seq1
Length=23539531
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 8291592 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 8291651
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 8291652 CCGGGTTTCGGC 8291663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15848279208255
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |