Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 2e-12 >seq1 Length=23539531 Score = 87.8 bits (96), Expect = 2e-12 Identities = 319/491 (65%), Gaps = 10/491 (2%) Strand=Plus/Plus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 ||||||||| || || | |||||| || || || || | |||||||||||| || || || Sbjct 10003402 CACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGT-TT 10003460 Query 136698 TAAACCCTTC-TCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGG 136756 ||| ||| | | |||||| ||| ||||| || | || || |||| | || |||| Sbjct 10003461 TAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTCGG 10003520 Query 136757 CCACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGT 136816 |||| | || | ||| || |||||||| ||| | | || || || |||||||| | Sbjct 10003521 CCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCAT-T 10003579 Query 136817 TCAATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGC 136875 | ||| || || || | |||||||| | || || | || || || || | Sbjct 10003580 TTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGCACCTTCTGG 10003639 Query 136876 GGAATTTCATCGATATTCTGTACAGATCCGTTGTT---TTTGATGATTTTCATCATGAGA 136932 || || || || || || | ||||| || | | |||| ||| ||||| Sbjct 10003640 GGTATGGTCTCAATGTTTTGAATCGATCCCCTGCTCGATATGATCTGGTTCTTCATGTCG 10003699 Query 136933 TCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGA 136992 || ||| | | || || | || | | | ||| || || || || || Sbjct 10003700 TC-GTC--CCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGG 10003756 Query 136993 TATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCG 137052 ||||||| || || |||| || ||| | || | ||| |||||||||| ||||| Sbjct 10003757 AATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTCA 10003816 Query 137053 TTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTC 137112 ||||| |||| ||||| || || | || || |||||| ||| | | || ||| ||| Sbjct 10003817 TTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTTC 10003876 Query 137113 CGTAAACCGTG 137123 || | |||||| Sbjct 10003877 CGGACACCGTG 10003887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445052010322080