Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq1 87.8 2e-12
>seq1
Length=23539531
Score = 87.8 bits (96), Expect = 2e-12
Identities = 319/491 (65%), Gaps = 10/491 (2%)
Strand=Plus/Plus
Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697
||||||||| || || | |||||| || || || || | |||||||||||| || || ||
Sbjct 10003402 CACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGT-TT 10003460
Query 136698 TAAACCCTTC-TCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGG 136756
||| ||| | | |||||| ||| ||||| || | || || |||| | || ||||
Sbjct 10003461 TAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTCGG 10003520
Query 136757 CCACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGT 136816
|||| | || | ||| || |||||||| ||| | | || || || |||||||| |
Sbjct 10003521 CCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCAT-T 10003579
Query 136817 TCAATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGC 136875
| ||| || || || | |||||||| | || || | || || || || |
Sbjct 10003580 TTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGCACCTTCTGG 10003639
Query 136876 GGAATTTCATCGATATTCTGTACAGATCCGTTGTT---TTTGATGATTTTCATCATGAGA 136932
|| || || || || || | ||||| || | | |||| ||| |||||
Sbjct 10003640 GGTATGGTCTCAATGTTTTGAATCGATCCCCTGCTCGATATGATCTGGTTCTTCATGTCG 10003699
Query 136933 TCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGA 136992
|| ||| | | || || | || | | | ||| || || || || ||
Sbjct 10003700 TC-GTC--CCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGG 10003756
Query 136993 TATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCG 137052
||||||| || || |||| || ||| | || | ||| |||||||||| |||||
Sbjct 10003757 AATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTCA 10003816
Query 137053 TTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTC 137112
||||| |||| ||||| || || | || || |||||| ||| | | || ||| |||
Sbjct 10003817 TTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTTC 10003876
Query 137113 CGTAAACCGTG 137123
|| | ||||||
Sbjct 10003877 CGGACACCGTG 10003887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445052010322080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |