Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1 311 1e-79 >seq1 Length=23539531 Score = 311 bits (344), Expect = 1e-79 Identities = 477/674 (71%), Gaps = 16/674 (2%) Strand=Plus/Plus Query 146841 GAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTT 146900 ||| || || ||||||| |||| | | ||| | |||||||| |||||||| || | Sbjct 2846000 GAAGTCCTCGATGTCCTGCACCTGACGTTTAATGATCAGCTTGGGAAAGGGTCGCGGTGT 2846059 Query 146901 CCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAG 146960 | |||| || ||||| ||||| |||||||||||||||||||| | || |||| Sbjct 2846060 GCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGTTGAGGTAGACGTGTGTATCGCCCAT 2846119 Query 146961 GGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAG 147020 |||||| |||||||| |||||||| || || ||||| ||||| | ||||| ||||||||| Sbjct 2846120 GGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCAATCATGTGGGTGAGCAG 2846179 Query 147021 CGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAG 147080 | |||| ||| ||||||||||| || |||||||||||||| | |||||||| || Sbjct 2846180 GGCGTAGGAGGCGATGTTGAAGGGTACGCCCAGGCCCATGTCGGCGCTTCTCTGGTAGAG 2846239 Query 147081 CTGGCACGAGAGCTCCCCG------TCGGCCACGTAAAACTGGCACAGGATGTGGCACGG 147134 ||||||||| ||||| ||| |||| ||||||||||| || | ||||||||| Sbjct 2846240 CTGGCACGACAGCTCACCGCGCTTCTCGGAGACGTAAAACTGCGCCAAGCAGTGGCACGG 2846299 Query 147135 CGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCT 147194 |||||| ||||| || | |||| || ||||| ||||| | | | || | | | Sbjct 2846300 CGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCCAAGCCGACATGATGATGCGTC-GGT 2846358 Query 147195 CT-CGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCC 147253 || |||||| || | || ||||| ||| | ||||||||| | |||| ||| | Sbjct 2846359 CTGAGGGGTTATTCCTGATGGTGTCGATCACCTGGCGCAGCTGGTCGATTCCCTTGCCGC 2846418 Query 147254 CGTAGT--TTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTA 147311 ||||| | || ||||| ||||| ||||| || |||||||||||||||||||| Sbjct 2846419 TGTAGTCATCGT--CGCAGGTGCCGTACTGCGCCCCGAAATGCCTCCACTGGAAGCCGTA 2846476 Query 147312 CACTGGCCCCAGGTCGCC--GGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCG 147369 ||| || ||||| ||||| ||| || | || ||| ||| | | || || || Sbjct 2846477 CACCGGGCCCAGATCGCCAACGGC--TCGGCCCGTGAACCCCATCTTGTCCAGGAATTCT 2846534 Query 147370 GGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTG 147429 ||| | || | ||||||||| ||| ||| || ||| ||| | ||||| Sbjct 2846535 CTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCCTGCAGCAGCTTGGCATCCGTC 2846594 Query 147430 GAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTG 147489 |||| | |||||| ||||||||||| ||| | | | ||||| | ||| ||| Sbjct 2846595 TTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACCGCGCGGAAGAAGACACGCTTCGTG 2846654 Query 147490 GTCAGCAGGGGGAA 147503 ||||||||||| || Sbjct 2846655 GTCAGCAGGGGAAA 2846668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583432430061600