Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq1 311 1e-79
>seq1
Length=23539531
Score = 311 bits (344), Expect = 1e-79
Identities = 477/674 (71%), Gaps = 16/674 (2%)
Strand=Plus/Plus
Query 146841 GAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTT 146900
||| || || ||||||| |||| | | ||| | |||||||| |||||||| || |
Sbjct 2846000 GAAGTCCTCGATGTCCTGCACCTGACGTTTAATGATCAGCTTGGGAAAGGGTCGCGGTGT 2846059
Query 146901 CCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAG 146960
| |||| || ||||| ||||| |||||||||||||||||||| | || ||||
Sbjct 2846060 GCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGTTGAGGTAGACGTGTGTATCGCCCAT 2846119
Query 146961 GGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAG 147020
|||||| |||||||| |||||||| || || ||||| ||||| | ||||| |||||||||
Sbjct 2846120 GGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCAATCATGTGGGTGAGCAG 2846179
Query 147021 CGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAG 147080
| |||| ||| ||||||||||| || |||||||||||||| | |||||||| ||
Sbjct 2846180 GGCGTAGGAGGCGATGTTGAAGGGTACGCCCAGGCCCATGTCGGCGCTTCTCTGGTAGAG 2846239
Query 147081 CTGGCACGAGAGCTCCCCG------TCGGCCACGTAAAACTGGCACAGGATGTGGCACGG 147134
||||||||| ||||| ||| |||| ||||||||||| || | |||||||||
Sbjct 2846240 CTGGCACGACAGCTCACCGCGCTTCTCGGAGACGTAAAACTGCGCCAAGCAGTGGCACGG 2846299
Query 147135 CGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCT 147194
|||||| ||||| || | |||| || ||||| ||||| | | | || | | |
Sbjct 2846300 CGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCCAAGCCGACATGATGATGCGTC-GGT 2846358
Query 147195 CT-CGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCC 147253
|| |||||| || | || ||||| ||| | ||||||||| | |||| ||| |
Sbjct 2846359 CTGAGGGGTTATTCCTGATGGTGTCGATCACCTGGCGCAGCTGGTCGATTCCCTTGCCGC 2846418
Query 147254 CGTAGT--TTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTA 147311
||||| | || ||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 2846419 TGTAGTCATCGT--CGCAGGTGCCGTACTGCGCCCCGAAATGCCTCCACTGGAAGCCGTA 2846476
Query 147312 CACTGGCCCCAGGTCGCC--GGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCG 147369
||| || ||||| ||||| ||| || | || ||| ||| | | || || ||
Sbjct 2846477 CACCGGGCCCAGATCGCCAACGGC--TCGGCCCGTGAACCCCATCTTGTCCAGGAATTCT 2846534
Query 147370 GGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTG 147429
||| | || | ||||||||| ||| ||| || ||| ||| | |||||
Sbjct 2846535 CTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCCTGCAGCAGCTTGGCATCCGTC 2846594
Query 147430 GAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTG 147489
|||| | |||||| ||||||||||| ||| | | | ||||| | ||| |||
Sbjct 2846595 TTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACCGCGCGGAAGAAGACACGCTTCGTG 2846654
Query 147490 GTCAGCAGGGGGAA 147503
||||||||||| ||
Sbjct 2846655 GTCAGCAGGGGAAA 2846668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583432430061600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |