Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 205 1e-46 seq1 96.9 5e-14 seq3864 86.0 9e-11 seq4 86.0 9e-11 >seq2 Length=21544594 Score = 205 bits (226), Expect = 1e-46 Identities = 365/524 (70%), Gaps = 23/524 (4%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--A 1455853 |||| ||||| || || ||||||| ||||||||| || | | | || || || | Sbjct 8575854 AGGCTGAGGCTTCTTTCTGGACCGTCGAGGAGGTGGATTT----GTC--CAAGGACCTTA 8575801 Query 1455854 CTGGGTGTCGC----TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909 ||| || | | ||| ||||||||||||||||||||| |||||| || ||||| | Sbjct 8575800 CTGACTGGCACCGCCTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCT 8575741 Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969 || |||||| ||||||||||| ||||||||||| | || || | | ||||| Sbjct 8575740 TT-GCCGCCTCTGATGGCATCGTAAACGAGAACCTGGTGGAGCGATTCAGTCAGGAGGTG 8575682 Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCT 1456029 || | | |||||||| | || ||||| |||||||||||||| || ||| | ||||| Sbjct 8575681 CAGATCACGGAGGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCG 8575622 Query 1456030 GAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTC 1456089 || | ||| | |||||||||| ||| || ||| || | || || |||| Sbjct 8575621 GAGATGTACAGTGTTTTGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTG 8575562 Query 1456090 TTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGG 1456149 || ||| ||||| ||| ||||| | |||| | ||||| |||||||| || ||| Sbjct 8575561 TTCAACGCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGG 8575502 Query 1456150 ATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCG 1456205 ||| |||| || || | || | ||||| || ||| |||||||| ||| | Sbjct 8575501 ATCTCGTCCAAGTCGG--CT---AATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGG 8575447 Query 1456206 AGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCA 1456265 |||||||||| ||| ||||| ||| | |||| || ||||| ||||||||||| || | Sbjct 8575446 AGGGCATCTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGA 8575387 Query 1456266 TGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||| || || ||| |||||| | ||| ||||||||| Sbjct 8575386 TGCCTGG-ATTGACCTTCTCCAACGAGCTGATCTCTCGCGACGA 8575344 Score = 93.3 bits (102), Expect = 6e-13 Identities = 156/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| ||| || || | || ||| | ||||| ||| ||| | ||||| || Sbjct 8575269 AGATCATCCGCGACGCGGTGGCCATTGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTCA 8575210 Query 1456581 CGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 | |||||||||||| || ||| | |||| |||||||||||| || || || |||| Sbjct 8575209 ATTTGATCGGCATGAACTGCGACC--TGATGTCCCAGTACATTGAGTTC-GTAGCGGACC 8575153 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699 | |||||| || | | ||| ||| ||| |||| || ||||| || | Sbjct 8575152 GTTTGCTCGTGGAGTTGGGCGTTGGA-AAGATCTACAACACCAAAAACCCATTTAACTTC 8575094 Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGA 1456740 |||||| |||| ||||| || || ||||||||||||||||| Sbjct 8575093 ATGGAGATGATATCGCTGGATGGAAAGACCAACTTTTTCGA 8575053 >seq1 Length=23539531 Score = 96.9 bits (106), Expect = 5e-14 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || |||||||||||| || ||||||||| || |||||||| |||||| | || || Sbjct 10004793 GGAGGCGGCAAGCGCCCCGGTGCCTTTGCCATTTATCTGGAACCCTGGCACTCGGATGTC 10004734 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | ||||| || || |||||| ||||| | | ||||| | |||| ||| Sbjct 10004733 TTTGAGTTCCTGGAACTGAAGAAGAACACGGGCAAAGAA----GAGAATC--GCGCACGC 10004680 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 ||||| ||||||| |||||||| ||| || || ||| ||| ||| | || | | Sbjct 10004679 GATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTGGAGGCCAACGGT 10004620 Query 261968 GACTGGTCGCTCTTTTGCCC 261987 || ||||||||| | ||||| Sbjct 10004619 GATTGGTCGCTCATGTGCCC 10004600 >seq3864 Length=3213 Score = 86.0 bits (94), Expect = 9e-11 Identities = 160/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAAC-AAGTC 724969 || |||||||| ||||||||||| || || ||| | ||| | || | ||| | Sbjct 1729 ATTTACAAGGTTCTCAAGCAGGTCCATCCTGACACC-----GGCAT--TTCATCTAAGGC 1677 Query 724970 CATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGG 725029 ||| ||||||||| ||||| || || || |||| ||||| | ||||||| Sbjct 1676 GATGAGCATCATGAACAGCTTTGTAAATGATATTTTCGAGCGCATTGCTGCCGAGGCGTC 1617 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||| ||||| | || |||||||||| || ||| || || || ||||| || || || Sbjct 1616 TCGTCTGGCTCACTACAACAAGCGCTCGACCATCACCAGTCGAGAAATCCAAACGGCTGT 1557 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| || || |||||| ||| || ||| ||||| |||| Sbjct 1556 TCGCCTGCTTCTGCCGGGAGAGTTGGCCAAGCATGCTGTCAGTGAGGGAACCA 1504 >seq4 Length=24153973 Score = 86.0 bits (94), Expect = 9e-11 Identities = 228/346 (66%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931 || || || ||||| || ||| ||| | | ||| |||| | || || | ||||||| Sbjct 4095600 AATCGTAGCATGGCGCAGCGGGACTGGATAGGCTCTATGATC-TTCTCGCTGGTGTTGCA 4095658 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991 |||||||||||| || || || || | | | ||||||||| || || ||||| || Sbjct 4095659 GGCCAGGGCAAAACGAGTGGTGCTGCTGTAGATCTCCATGGTCCGGCGCAGTGCCTGCTG 4095718 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 ||| || ||| | || ||| |||||||| || || | |||||||| | || |||| Sbjct 4095719 GGCACCCTCCGTCATGCTGTCTGCCTCGTCCAGAATCACAATCTTGTGCCTGCCCCGCGG 4095778 Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111 || ||| ||| | || ||||| | ||||| || || || | || || Sbjct 4095779 CAATGTCACCTTTTGCTGAGCAAACATCTTGATCTTGTTGCGGACCACATCGATTCCTCG 4095838 Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCG 333171 || | || || || || ||||| || ||||| | | | | |||| || | | Sbjct 4095839 TTCATTGGAGGCATTCAGCTCGAGGACAGCCTCCTTGTAGCTGTCTCCCAGAAGAATCCT 4095898 Query 333172 CGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 || || ||| |||| | || ||||||||| ||| || |||||| Sbjct 4095899 AGCAAGACACTGGATGGTGGTTGTCTTGCCCACGCCTGGAGGACCC 4095944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177076333446278