Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq2 205 1e-46
seq1 96.9 5e-14
seq3864 86.0 9e-11
seq4 86.0 9e-11
>seq2
Length=21544594
Score = 205 bits (226), Expect = 1e-46
Identities = 365/524 (70%), Gaps = 23/524 (4%)
Strand=Plus/Minus
Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--A 1455853
|||| ||||| || || ||||||| ||||||||| || | | | || || || |
Sbjct 8575854 AGGCTGAGGCTTCTTTCTGGACCGTCGAGGAGGTGGATTT----GTC--CAAGGACCTTA 8575801
Query 1455854 CTGGGTGTCGC----TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909
||| || | | ||| ||||||||||||||||||||| |||||| || ||||| |
Sbjct 8575800 CTGACTGGCACCGCCTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCT 8575741
Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969
|| |||||| ||||||||||| ||||||||||| | || || | | |||||
Sbjct 8575740 TT-GCCGCCTCTGATGGCATCGTAAACGAGAACCTGGTGGAGCGATTCAGTCAGGAGGTG 8575682
Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCT 1456029
|| | | |||||||| | || ||||| |||||||||||||| || ||| | |||||
Sbjct 8575681 CAGATCACGGAGGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCG 8575622
Query 1456030 GAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTC 1456089
|| | ||| | |||||||||| ||| || ||| || | || || ||||
Sbjct 8575621 GAGATGTACAGTGTTTTGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTG 8575562
Query 1456090 TTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGG 1456149
|| ||| ||||| ||| ||||| | |||| | ||||| |||||||| || |||
Sbjct 8575561 TTCAACGCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGG 8575502
Query 1456150 ATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCG 1456205
||| |||| || || | || | ||||| || ||| |||||||| ||| |
Sbjct 8575501 ATCTCGTCCAAGTCGG--CT---AATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGG 8575447
Query 1456206 AGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCA 1456265
|||||||||| ||| ||||| ||| | |||| || ||||| ||||||||||| || |
Sbjct 8575446 AGGGCATCTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGA 8575387
Query 1456266 TGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309
|||| || || ||| |||||| | ||| |||||||||
Sbjct 8575386 TGCCTGG-ATTGACCTTCTCCAACGAGCTGATCTCTCGCGACGA 8575344
Score = 93.3 bits (102), Expect = 6e-13
Identities = 156/221 (71%), Gaps = 5/221 (2%)
Strand=Plus/Minus
Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580
|||||||| ||| || || | || ||| | ||||| ||| ||| | ||||| ||
Sbjct 8575269 AGATCATCCGCGACGCGGTGGCCATTGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTCA 8575210
Query 1456581 CGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639
| |||||||||||| || ||| | |||| |||||||||||| || || || ||||
Sbjct 8575209 ATTTGATCGGCATGAACTGCGACC--TGATGTCCCAGTACATTGAGTTC-GTAGCGGACC 8575153
Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699
| |||||| || | | ||| ||| ||| |||| || ||||| || |
Sbjct 8575152 GTTTGCTCGTGGAGTTGGGCGTTGGA-AAGATCTACAACACCAAAAACCCATTTAACTTC 8575094
Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGA 1456740
|||||| |||| ||||| || || |||||||||||||||||
Sbjct 8575093 ATGGAGATGATATCGCTGGATGGAAAGACCAACTTTTTCGA 8575053
>seq1
Length=23539531
Score = 96.9 bits (106), Expect = 5e-14
Identities = 142/200 (71%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|| |||||||||||| || ||||||||| || |||||||| |||||| | || ||
Sbjct 10004793 GGAGGCGGCAAGCGCCCCGGTGCCTTTGCCATTTATCTGGAACCCTGGCACTCGGATGTC 10004734
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
| | | ||||| || || |||||| ||||| | | ||||| | |||| |||
Sbjct 10004733 TTTGAGTTCCTGGAACTGAAGAAGAACACGGGCAAAGAA----GAGAATC--GCGCACGC 10004680
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967
||||| ||||||| |||||||| ||| || || ||| ||| ||| | || | |
Sbjct 10004679 GATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTGGAGGCCAACGGT 10004620
Query 261968 GACTGGTCGCTCTTTTGCCC 261987
|| ||||||||| | |||||
Sbjct 10004619 GATTGGTCGCTCATGTGCCC 10004600
>seq3864
Length=3213
Score = 86.0 bits (94), Expect = 9e-11
Identities = 160/233 (69%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAAC-AAGTC 724969
|| |||||||| ||||||||||| || || ||| | ||| | || | ||| |
Sbjct 1729 ATTTACAAGGTTCTCAAGCAGGTCCATCCTGACACC-----GGCAT--TTCATCTAAGGC 1677
Query 724970 CATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGG 725029
||| ||||||||| ||||| || || || |||| ||||| | |||||||
Sbjct 1676 GATGAGCATCATGAACAGCTTTGTAAATGATATTTTCGAGCGCATTGCTGCCGAGGCGTC 1617
Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089
||| ||||| | || |||||||||| || ||| || || || ||||| || || ||
Sbjct 1616 TCGTCTGGCTCACTACAACAAGCGCTCGACCATCACCAGTCGAGAAATCCAAACGGCTGT 1557
Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|||||| | ||| || || |||||| ||| || ||| ||||| ||||
Sbjct 1556 TCGCCTGCTTCTGCCGGGAGAGTTGGCCAAGCATGCTGTCAGTGAGGGAACCA 1504
>seq4
Length=24153973
Score = 86.0 bits (94), Expect = 9e-11
Identities = 228/346 (66%), Gaps = 2/346 (1%)
Strand=Plus/Plus
Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931
|| || || ||||| || ||| ||| | | ||| |||| | || || | |||||||
Sbjct 4095600 AATCGTAGCATGGCGCAGCGGGACTGGATAGGCTCTATGATC-TTCTCGCTGGTGTTGCA 4095658
Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991
|||||||||||| || || || || | | | ||||||||| || || ||||| ||
Sbjct 4095659 GGCCAGGGCAAAACGAGTGGTGCTGCTGTAGATCTCCATGGTCCGGCGCAGTGCCTGCTG 4095718
Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051
||| || ||| | || ||| |||||||| || || | |||||||| | || ||||
Sbjct 4095719 GGCACCCTCCGTCATGCTGTCTGCCTCGTCCAGAATCACAATCTTGTGCCTGCCCCGCGG 4095778
Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111
|| ||| ||| | || ||||| | ||||| || || || | || ||
Sbjct 4095779 CAATGTCACCTTTTGCTGAGCAAACATCTTGATCTTGTTGCGGACCACATCGATTCCTCG 4095838
Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCG 333171
|| | || || || || ||||| || ||||| | | | | |||| || | |
Sbjct 4095839 TTCATTGGAGGCATTCAGCTCGAGGACAGCCTCCTTGTAGCTGTCTCCCAGAAGAATCCT 4095898
Query 333172 CGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217
|| || ||| |||| | || ||||||||| ||| || ||||||
Sbjct 4095899 AGCAAGACACTGGATGGTGGTTGTCTTGCCCACGCCTGGAGGACCC 4095944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177076333446278
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |