Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq1 250 3e-61
seq9 116 4e-21
seq4 102 8e-17
seq3570 89.7 5e-13
seq671 82.4 8e-11
>seq1
Length=23539531
Score = 250 bits (276), Expect = 3e-61
Identities = 1128/1766 (64%), Gaps = 40/1766 (2%)
Strand=Plus/Minus
Query 7551 CGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACAT 7610
||| || ||| || || |||||| ||||||||||| | || || || || || || ||
Sbjct 10005169 CGCAGAGCGACCGCAGCATATGCTGATGCGCGTGGCGATCGGAATCCATGGAGAGGATAT 10005110
Query 7611 TGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCC 7670
|| || ||| ||||||| || | | |||| | | || || || || |||||
Sbjct 10005109 CGATGCAGCCGTGGAAACCTATAATCTTCTGTCGGAGCGCTACTTCACACATGCATCGCC 10005050
Query 7671 CACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCAT 7730
||| |||||||||| | ||||||| ||| || ||||| |||||||| | || |||||
Sbjct 10005049 CACACTGTTTGCCGCTGCCACAAACCGGCCGCAGTTGTCGTCGTGTTTCCTTCTGACCAT 10004990
Query 7731 GCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAA 7790
| | ||| |||||| ||||||| ||| | || | ||||||| || |||||
Sbjct 10004989 GACGGCCGACTCCATCGAGGGCATTTTCAAGTCTGTGGAACAATGCGCCATGATCTCCAA 10004930
Query 7791 ATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGC-CGCATCG 7849
| || ||| || || || || ||||| | | | || || || || | | || | |
Sbjct 10004929 GTCCGCCGGTGGCATCGGACTCAACGTGCATTGCATTCGTGCAAAGGGCACCTCGATTTG 10004870
Query 7850 TGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGG 7909
| ||| || || | ||| || || | |||||| || | || || ||||| | ||
Sbjct 10004869 CG-GCACAAATGGTACTTCCAATGGGTTGGTTCCCATGCTGAGGGTCTTTAATAATGTGG 10004811
Query 7910 TGCGACATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGC 7966
|| |||| || ||| || || |||||| || ||| |||||| ||| |||| |
Sbjct 10004810 CTCGTTATGTGGATCAGGGAGGCGGCAAGCGCCCCGGTGCCTTTGCCATTTATCTGGAAC 10004751
Query 7967 CGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACA 8026
| |||||| |||| | | | | || | ||| |||| ||| ||||| |
Sbjct 10004750 CCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAGAACACGGGCAAAGAAGAGA 10004691
Query 8027 GCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTC 8086
|| |||||||| || | || ||||| | |||||||| || |||| |||||
Sbjct 10004690 ATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTGG 10004631
Query 8087 ATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTT 8146
| | ||| | |||||||||||||||||| | || || | | | || |
Sbjct 10004630 AGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGTCCAGGTCTCCACGAAGTGT 10004571
Query 8147 ACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGC 8206
|| |||| ||| | ||||| | ||||||| || || || | | ||
Sbjct 10004570 GGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGGGCCAACCGAA 10004511
Query 8207 AAGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGC 8266
|| || || | |||| ||||| || || ||| || ||||| | |
Sbjct 10004510 CGGTTAAGGCTCAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGGAGACCGGAAATC 10004451
Query 8267 CGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCA 8326
|||||||||| | ||| |||||||||||| || ||||| || || || |||||||
Sbjct 10004450 CGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAATGTAGGCACCA 10004391
Query 8327 TTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCG 8386
|| |||||||| ||||| | ||||| || | || | | || || || | || |
Sbjct 10004390 TTAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATATTCCTCACCGGATGAGATTGCAG 10004331
Query 8387 TTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACG 8446
| ||||| | || || | | ||| |||||| || || || || || |
Sbjct 10004330 TCTGCAACTTGGCCTCCATCGCCCTCAACATGTTCGT--CACGCCG-GAGAAGACGTATG 10004274
Query 8447 ACTTTGAACAA-TTGAAAAACGCCGTGCAAGTGACGGTAC--GCAATTTAGATCGCATCA 8503
| ||| || || | || | | | ||| | ||| ||| || | || |
Sbjct 10004273 A-TTTCAAGAAGCTCAAGGAAGTC--ACAAAGATAGTTACCAAAAATCTAAACAAGATAA 10004217
Query 8504 TTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCG 8563
||||| |||||| |||||| || ||| || | || || || | || | ||||
Sbjct 10004216 TTGATATCAATTATTATCCGCTGCCAGAGGCAAGGAAGTCCAATTTGAGGCATCGTCCCG 10004157
Query 8564 TTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAA 8623
| ||| | || | || || | || || || || | |||| |||| |||||||
Sbjct 10004156 TGGGCATTGGTATTCAGGGATTCGCTGATGCCTTGATTCTCATGCGTTTCCCGTACGAAA 10004097
Query 8624 GCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAG 8683
|| ||||||| | | | || | ||| |||||| | || || ||||| || |
Sbjct 10004096 GCGAAGAAGCCGGTCTCTTGAATCAGCAGATATTTGAAACGATTTACTATGGCGCCTTGG 10004037
Query 8684 AAGCCAGCTGTCAACTTGCCC-GA--GAATTGGGCACGTACGAATCGTACGCGGGCAGCC 8740
|||||||||| |||| |||| || ||| || | |||||| | |||| ||||||||
Sbjct 10004036 AAGCCAGCTGCGAACTGGCCCAGACCGAA---GGTCCATACGAAACCTACGAGGGCAGCC 10003980
Query 8741 CTGCCAGCCGCGGAATATTGCAATACGACATGTGG---AATGTCACGCCCACCTCTTTGT 8797
| | ||| ||||| ||||| |||||||||||| || || ||| || |||
Sbjct 10003979 CGGTGAGCAAAGGAATTTTGCAGTACGACATGTGGGACAAGGT---GCCAACGAACCTGT 10003923
Query 8798 GGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGG 8857
|| | ||| | ||||| ||| | |||| | || || || ||| | |
Sbjct 10003922 GGGACTGGCAGAAATTGAAGGAGTCCATTAAGAAGCACGGTGTCCGGAACTCACTGCTCG 10003863
Query 8858 TGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGC 8917
| ||| ||||||||| || | || ||||| |||||||| ||||| |||||||| ||||
Sbjct 10003862 TTGCTCCCATGCCCACTGCATCTACAGCTCAGATAATGGGCAACAATGAATCCTTCGAGC 10003803
Query 8918 CGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAATC 8977
||| ||||| ||| | ||| | ||||| || ||||||| || || | || |
Sbjct 10003802 CGTACACCACGAACATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTGGTCAACC 10003743
Query 8978 GTCATTTGATGCGCGACTTGATCGAAGCGGGCGTTT---ACGACGACA--AAATGCGCGA 9032
||||||| |||||||| | | |||| || | | | ||||||||| || | ||
Sbjct 10003742 ATCATTTGTTGCGCGACCTAACCGAACTGGACTTGTGGGACGACGACATGAAGAACCAGA 10003683
Query 9033 TGCCATCGTGGAAGCCAACGGCAGCG-TTCAGAACATTGACGCGGTGCCTCAACACATTA 9091
| |||| ||| | || | || |||| |||||||| | | || || | |
Sbjct 10003682 TCATATCG----AGC--AGGGGATCGATTCAAAACATTGAGACCATACCCCAGAAGGTGC 10003629
Query 9092 AAGAGCTGTATAAAACCGTTTGGGAAAT-GAAGCAAAGCACGCTGATCGGCATGGCTGCG 9150
||| ||||| || || || |||||||| || ||| | | ||| ||||| ||
Sbjct 10003628 GAGATCTGTACAAGACGGTGTGGGAAATCTCAGTCAAGTCCAC-GATTAAAATGGCCGCC 10003570
Query 9151 GATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACCAACT 9210
||| | || || || || ||||||||||| || || ||| | || |||| ||||
Sbjct 10003569 GATCGTGGTGCGTTCATAGATCAGAGTCAGTCGTTCAACATACATGTGGCCGAGCCAAAC 10003510
Query 9211 TACGCTTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCATG 9270
|| | | || | ||| || | || | |||||| ||| | ||||| || |||
Sbjct 10003509 TATGGAAAGCTGACTTCCATACACTTTTACTCCTGGAAAGCAGGTCTTAAAACCGGAATG 10003450
Query 9271 TACTATTTGCGCACAAAACCCGCCGC 9296
|||||| ||||||| || || || ||
Sbjct 10003449 TACTATCTGCGCACCAAGCCAGCTGC 10003424
Score = 129 bits (142), Expect = 6e-25
Identities = 164/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| | ||| || ||||| ||||| |||||||| ||||| | |||| |
Sbjct 10088933 AGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGG 10088874
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || ||||| ||||| || || |||| |||||||||||| || || || ||||||
Sbjct 10088873 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 10088814
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || ||||| || |||||| || | || || |||| ||| || || |||||
Sbjct 10088813 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTG 10088754
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721
||||| || || || | || |||||||| || ||||| |||| ||
Sbjct 10088753 ATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTATT 10088708
Score = 100 bits (110), Expect = 3e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| | ||| || || || ||||| || |||||||||||| | ||| |
Sbjct 4075133 AGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 4075074
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || ||||| ||||| || || |||| |||||||||||| || || ||||| ||
Sbjct 4075073 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 4075014
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| || | ||||| || | ||||| || | ||
Sbjct 4075013 TTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTG 4074954
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || ||||| | ||||| ||||| || |||||
Sbjct 4074953 ATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916
>seq9
Length=20829647
Score = 116 bits (128), Expect = 4e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| || | ||| || || || ||||| || |||||||||||| | ||| |
Sbjct 5792478 AGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 5792537
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| || ||||| || || || |||||||||||||||||||| || || || || ||
Sbjct 5792538 CCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 5792597
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| || | || ||||| | || || || | ||
Sbjct 5792598 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTG 5792657
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||| || ||||| | ||| ||||||||||||||||| |||
Sbjct 5792658 ATGGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATATTG 5792699
Score = 96.9 bits (106), Expect = 4e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| || | ||| || || || ||||| || |||||||||||| | ||| |
Sbjct 5792250 AGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 5792309
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| || ||||| || || || || ||||||||||||||||| || || || || ||
Sbjct 5792310 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 5792369
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| || | || ||||| | || || || | |||
Sbjct 5792370 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTG 5792429
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || || || | ||| || ||||| || |||||
Sbjct 5792430 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 5792467
>seq4
Length=24153973
Score = 102 bits (112), Expect = 8e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544
||||||| | ||| || | ||| | ||| || || || ||||| || |||||||| |||
Sbjct 3789599 TTCCTCCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGG 3789658
Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604
| |||| | ||| || || || ||||| || || |||| |||||||||||| || |
Sbjct 3789659 ACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 3789718
Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664
| || || || || || ||||| || || || || | ||||| || | || |
Sbjct 3789719 GGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCAA 3789778
Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
| || | ||| ||||| || || || | ||| || ||||| || |||||
Sbjct 3789779 CCTCCAAAGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827
>seq3570
Length=216
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || || || ||||| || |||||||||||| | ||| | ||| || |||||
Sbjct 210 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTG 151
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
|| || || || ||||||||||||||||| || || || || || || || || || ||
Sbjct 150 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 91
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
||||| || | || ||||| | || || || | || ||||| || || ||
Sbjct 90 GGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCAGT 31
Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713
| ||| || ||||| || |||||
Sbjct 30 CAGAGTCTTCACGAAGATCTGCAT 7
>seq671
Length=216
Score = 82.4 bits (90), Expect = 8e-11
Identities = 126/180 (70%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || || || ||||| || ||||||||||| || ||| | || ||||||||
Sbjct 35 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTCGAGCTG 94
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
||||| || || |||| |||||||||||| || || || || || || ||||| || ||
Sbjct 95 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGATCTT 154
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
|| || || | ||||| || | || || || || || ||||| || |||||
Sbjct 155 AGCCTTCACATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTTTCCGGT 214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505350267119880
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