Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1 250 3e-61 seq9 116 4e-21 seq4 102 8e-17 seq3570 89.7 5e-13 seq671 82.4 8e-11 >seq1 Length=23539531 Score = 250 bits (276), Expect = 3e-61 Identities = 1128/1766 (64%), Gaps = 40/1766 (2%) Strand=Plus/Minus Query 7551 CGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACAT 7610 ||| || ||| || || |||||| ||||||||||| | || || || || || || || Sbjct 10005169 CGCAGAGCGACCGCAGCATATGCTGATGCGCGTGGCGATCGGAATCCATGGAGAGGATAT 10005110 Query 7611 TGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCC 7670 || || ||| ||||||| || | | |||| | | || || || || ||||| Sbjct 10005109 CGATGCAGCCGTGGAAACCTATAATCTTCTGTCGGAGCGCTACTTCACACATGCATCGCC 10005050 Query 7671 CACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCAT 7730 ||| |||||||||| | ||||||| ||| || ||||| |||||||| | || ||||| Sbjct 10005049 CACACTGTTTGCCGCTGCCACAAACCGGCCGCAGTTGTCGTCGTGTTTCCTTCTGACCAT 10004990 Query 7731 GCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAA 7790 | | ||| |||||| ||||||| ||| | || | ||||||| || ||||| Sbjct 10004989 GACGGCCGACTCCATCGAGGGCATTTTCAAGTCTGTGGAACAATGCGCCATGATCTCCAA 10004930 Query 7791 ATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGC-CGCATCG 7849 | || ||| || || || || ||||| | | | || || || || | | || | | Sbjct 10004929 GTCCGCCGGTGGCATCGGACTCAACGTGCATTGCATTCGTGCAAAGGGCACCTCGATTTG 10004870 Query 7850 TGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGG 7909 | ||| || || | ||| || || | |||||| || | || || ||||| | || Sbjct 10004869 CG-GCACAAATGGTACTTCCAATGGGTTGGTTCCCATGCTGAGGGTCTTTAATAATGTGG 10004811 Query 7910 TGCGACATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGC 7966 || |||| || ||| || || |||||| || ||| |||||| ||| |||| | Sbjct 10004810 CTCGTTATGTGGATCAGGGAGGCGGCAAGCGCCCCGGTGCCTTTGCCATTTATCTGGAAC 10004751 Query 7967 CGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACA 8026 | |||||| |||| | | | | || | ||| |||| ||| ||||| | Sbjct 10004750 CCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAGAACACGGGCAAAGAAGAGA 10004691 Query 8027 GCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTC 8086 || |||||||| || | || ||||| | |||||||| || |||| ||||| Sbjct 10004690 ATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTGG 10004631 Query 8087 ATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTT 8146 | | ||| | |||||||||||||||||| | || || | | | || | Sbjct 10004630 AGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGTCCAGGTCTCCACGAAGTGT 10004571 Query 8147 ACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGC 8206 || |||| ||| | ||||| | ||||||| || || || | | || Sbjct 10004570 GGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGGGCCAACCGAA 10004511 Query 8207 AAGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGC 8266 || || || | |||| ||||| || || ||| || ||||| | | Sbjct 10004510 CGGTTAAGGCTCAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGGAGACCGGAAATC 10004451 Query 8267 CGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCA 8326 |||||||||| | ||| |||||||||||| || ||||| || || || ||||||| Sbjct 10004450 CGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAATGTAGGCACCA 10004391 Query 8327 TTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCG 8386 || |||||||| ||||| | ||||| || | || | | || || || | || | Sbjct 10004390 TTAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATATTCCTCACCGGATGAGATTGCAG 10004331 Query 8387 TTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACG 8446 | ||||| | || || | | ||| |||||| || || || || || | Sbjct 10004330 TCTGCAACTTGGCCTCCATCGCCCTCAACATGTTCGT--CACGCCG-GAGAAGACGTATG 10004274 Query 8447 ACTTTGAACAA-TTGAAAAACGCCGTGCAAGTGACGGTAC--GCAATTTAGATCGCATCA 8503 | ||| || || | || | | | ||| | ||| ||| || | || | Sbjct 10004273 A-TTTCAAGAAGCTCAAGGAAGTC--ACAAAGATAGTTACCAAAAATCTAAACAAGATAA 10004217 Query 8504 TTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCG 8563 ||||| |||||| |||||| || ||| || | || || || | || | |||| Sbjct 10004216 TTGATATCAATTATTATCCGCTGCCAGAGGCAAGGAAGTCCAATTTGAGGCATCGTCCCG 10004157 Query 8564 TTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAA 8623 | ||| | || | || || | || || || || | |||| |||| ||||||| Sbjct 10004156 TGGGCATTGGTATTCAGGGATTCGCTGATGCCTTGATTCTCATGCGTTTCCCGTACGAAA 10004097 Query 8624 GCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAG 8683 || ||||||| | | | || | ||| |||||| | || || ||||| || | Sbjct 10004096 GCGAAGAAGCCGGTCTCTTGAATCAGCAGATATTTGAAACGATTTACTATGGCGCCTTGG 10004037 Query 8684 AAGCCAGCTGTCAACTTGCCC-GA--GAATTGGGCACGTACGAATCGTACGCGGGCAGCC 8740 |||||||||| |||| |||| || ||| || | |||||| | |||| |||||||| Sbjct 10004036 AAGCCAGCTGCGAACTGGCCCAGACCGAA---GGTCCATACGAAACCTACGAGGGCAGCC 10003980 Query 8741 CTGCCAGCCGCGGAATATTGCAATACGACATGTGG---AATGTCACGCCCACCTCTTTGT 8797 | | ||| ||||| ||||| |||||||||||| || || ||| || ||| Sbjct 10003979 CGGTGAGCAAAGGAATTTTGCAGTACGACATGTGGGACAAGGT---GCCAACGAACCTGT 10003923 Query 8798 GGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGG 8857 || | ||| | ||||| ||| | |||| | || || || ||| | | Sbjct 10003922 GGGACTGGCAGAAATTGAAGGAGTCCATTAAGAAGCACGGTGTCCGGAACTCACTGCTCG 10003863 Query 8858 TGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGC 8917 | ||| ||||||||| || | || ||||| |||||||| ||||| |||||||| |||| Sbjct 10003862 TTGCTCCCATGCCCACTGCATCTACAGCTCAGATAATGGGCAACAATGAATCCTTCGAGC 10003803 Query 8918 CGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAATC 8977 ||| ||||| ||| | ||| | ||||| || ||||||| || || | || | Sbjct 10003802 CGTACACCACGAACATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTGGTCAACC 10003743 Query 8978 GTCATTTGATGCGCGACTTGATCGAAGCGGGCGTTT---ACGACGACA--AAATGCGCGA 9032 ||||||| |||||||| | | |||| || | | | ||||||||| || | || Sbjct 10003742 ATCATTTGTTGCGCGACCTAACCGAACTGGACTTGTGGGACGACGACATGAAGAACCAGA 10003683 Query 9033 TGCCATCGTGGAAGCCAACGGCAGCG-TTCAGAACATTGACGCGGTGCCTCAACACATTA 9091 | |||| ||| | || | || |||| |||||||| | | || || | | Sbjct 10003682 TCATATCG----AGC--AGGGGATCGATTCAAAACATTGAGACCATACCCCAGAAGGTGC 10003629 Query 9092 AAGAGCTGTATAAAACCGTTTGGGAAAT-GAAGCAAAGCACGCTGATCGGCATGGCTGCG 9150 ||| ||||| || || || |||||||| || ||| | | ||| ||||| || Sbjct 10003628 GAGATCTGTACAAGACGGTGTGGGAAATCTCAGTCAAGTCCAC-GATTAAAATGGCCGCC 10003570 Query 9151 GATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACCAACT 9210 ||| | || || || || ||||||||||| || || ||| | || |||| |||| Sbjct 10003569 GATCGTGGTGCGTTCATAGATCAGAGTCAGTCGTTCAACATACATGTGGCCGAGCCAAAC 10003510 Query 9211 TACGCTTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCATG 9270 || | | || | ||| || | || | |||||| ||| | ||||| || ||| Sbjct 10003509 TATGGAAAGCTGACTTCCATACACTTTTACTCCTGGAAAGCAGGTCTTAAAACCGGAATG 10003450 Query 9271 TACTATTTGCGCACAAAACCCGCCGC 9296 |||||| ||||||| || || || || Sbjct 10003449 TACTATCTGCGCACCAAGCCAGCTGC 10003424 Score = 129 bits (142), Expect = 6e-25 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || ||||| ||||| |||||||| ||||| | |||| | Sbjct 10088933 AGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGG 10088874 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||||||| || || || |||||| Sbjct 10088873 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 10088814 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||| || | || || |||| ||| || || ||||| Sbjct 10088813 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTG 10088754 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 ||||| || || || | || |||||||| || ||||| |||| || Sbjct 10088753 ATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTATT 10088708 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || || ||||| || |||||||||||| | ||| | Sbjct 4075133 AGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 4075074 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||||||| || || ||||| || Sbjct 4075073 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 4075014 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| || | ||||| || | ||||| || | || Sbjct 4075013 TTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTG 4074954 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | ||||| ||||| || ||||| Sbjct 4074953 ATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916 >seq9 Length=20829647 Score = 116 bits (128), Expect = 4e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || | ||| || || || ||||| || |||||||||||| | ||| | Sbjct 5792478 AGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 5792537 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || || |||||||||||||||||||| || || || || || Sbjct 5792538 CCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 5792597 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| || | || ||||| | || || || | || Sbjct 5792598 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTG 5792657 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || ||||| | ||| ||||||||||||||||| ||| Sbjct 5792658 ATGGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATATTG 5792699 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || | ||| || || || ||||| || |||||||||||| | ||| | Sbjct 5792250 AGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 5792309 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || || || ||||||||||||||||| || || || || || Sbjct 5792310 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 5792369 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| || | || ||||| | || || || | ||| Sbjct 5792370 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTG 5792429 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | ||| || ||||| || ||||| Sbjct 5792430 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 5792467 >seq4 Length=24153973 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | ||| || | ||| | ||| || || || ||||| || |||||||| ||| Sbjct 3789599 TTCCTCCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGG 3789658 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || || || ||||| || || |||| |||||||||||| || | Sbjct 3789659 ACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 3789718 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || ||||| || || || || | ||||| || | || | Sbjct 3789719 GGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCAA 3789778 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | ||| ||||| || || || | ||| || ||||| || ||||| Sbjct 3789779 CCTCCAAAGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827 >seq3570 Length=216 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || ||||| || |||||||||||| | ||| | ||| || ||||| Sbjct 210 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTG 151 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || ||||||||||||||||| || || || || || || || || || || Sbjct 150 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 91 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| || | || ||||| | || || || | || ||||| || || || Sbjct 90 GGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCAGT 31 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | ||| || ||||| || ||||| Sbjct 30 CAGAGTCTTCACGAAGATCTGCAT 7 >seq671 Length=216 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || ||||| || ||||||||||| || ||| | || |||||||| Sbjct 35 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTCGAGCTG 94 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || |||| |||||||||||| || || || || || || ||||| || || Sbjct 95 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGATCTT 154 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | ||||| || | || || || || || ||||| || ||||| Sbjct 155 AGCCTTCACATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTTTCCGGT 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505350267119880