Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 329 4e-85 seq2 127 3e-24 >seq1 Length=23539531 Score = 329 bits (364), Expect = 4e-85 Identities = 1194/1851 (65%), Gaps = 38/1851 (2%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || |||||||||| | || || || || || ||||||||||| |||||||| ||| Sbjct 10003406 GTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTAAGA 10003465 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 ||| |||| ||| || || || || || || ||| |||| ||||| | | Sbjct 10003466 CCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTCGGCCACA 10003525 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || || || | ||| ||||| ||||| ||||| || || | ||| || |||||||| || Sbjct 10003526 TGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTTAATC 10003585 Query 68554 ATACTCTTT--TGAGGAATTTCCCAAATAGTCTT--AAAAATCTGTTTGATATCATCTGG 68609 | ||| |||| |||||||| | ||||| | | |||| | | ||||| Sbjct 10003586 GTGGACTTGACTGAG--ATTTCCCACACCGTCTTGTACAGATCTCGC----ACCTTCTGG 10003639 Query 68610 ---AAGG-CTCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCA 68664 | || ||| | |||||||| ||||| | ||||| || ||||| || || Sbjct 10003640 GGTATGGTCTCAATGTTTTGAATCGATCCCCTGCTCGATATGATCTGGTTCTTCATGTCG 10003699 Query 68665 TCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAAT 68724 || | |||||| | || |||| | | | | ||| | || || | || ||| Sbjct 10003700 TCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAAT 10003759 Query 68725 TCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTA 68784 || || || | |||| || ||||| || || |||| || || || | |||||||| Sbjct 10003760 TCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTCATTG 10003819 Query 68785 TTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTA 68844 || |||| || ||||| || |||||||| ||||| || || || | | || | Sbjct 10003820 TTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGG 10003879 Query 68845 AGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACA 68904 | ||| || | | || || || | | | ||| ||||| || | | ||| || Sbjct 10003880 ACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACC 10003939 Query 68905 ACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCA 68964 | ||| | ||||| || | |||||| || || | || | || ||||| Sbjct 10003940 TTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCG 10003999 Query 68965 TAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTT 69024 || || ||||| | || ||||| || || || || || || || || ||||| ||| Sbjct 10004000 TATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTT 10004059 Query 69025 TCGAAAATCTTCTTATT---GAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAA 69081 || || |||| || ||| |||| | |||||| || ||| | || || | | Sbjct 10004060 TCAAATATCTGCTGATTCAAGAGACCG---GCTTCTTCGCTTTCGTACGGGAAACGCATG 10004116 Query 69082 AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTT 69141 ||||| || ||||| || |||||||||| ||||| || | || | ||| ||| ||| Sbjct 10004117 AGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATGCCTCAAATTG 10004176 Query 69142 GAACTTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200 || ||| | || ||||| | ||||||||||| ||||| || || || || |||||| Sbjct 10004177 GA-CTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTTTAGATTTTT 10004235 Query 69201 GACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA-----TA 69255 | |||| || || ||||| || || |||||| | |||| ||| | Sbjct 10004236 GGTAACTATCTTTGTGACTTCCTTGAGCTTCTTGAAATCATA-CGTCT-TCTCCGGCGTG 10004293 Query 69256 ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA 69315 || ||||| || || || | || || | || || ||||| | ||||| | | | Sbjct 10004294 ACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAA 10004353 Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375 |||| | || || || || | || || || || || || || | ||| ||||| || Sbjct 10004354 TATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTG 10004413 Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435 ||||| |||| || ||||||||| | || || ||||| | || || || | || | Sbjct 10004414 CTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCC 10004473 Query 69436 TCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTC--TTGTAACGCTTCTCTT 69493 || || || | ||| | | ||| || | || || ||| || ||||| Sbjct 10004474 TCAATGATGGCAAACCACAGGGATTGAGCCTTAAC--CGTTCGGTTGGCCCGACCCTCTT 10004531 Query 69494 TTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGAC 69553 || |||| || ||| |||||||||||| ||||| || || | | || |||| Sbjct 10004532 GCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGAC 10004591 Query 69554 ATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGAT 69613 | | | || ||||| | ||||| || | | ||| || |||||||| || |||| Sbjct 10004592 ACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGAT 10004651 Query 69614 CGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttt 69673 |||| ||||| || || ||| ||||| | | | ||| ||||| || || || || | Sbjct 10004652 CGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCT 10004711 Query 69674 ttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGA 69733 | || || || || ||||| | | ||| || ||||| ||||| ||||| || || | | Sbjct 10004712 TCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGG 10004771 Query 69734 CTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCA 69793 | || || || || ||||||||||| | || | || |||||| |||| |||| Sbjct 10004772 CACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTAAAGACCCTCA 10004831 Query 69794 GCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGC 69853 |||| |||| | ||||| || |||||||||| || |||| | | || |||| | Sbjct 10004832 GCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCAC 10004891 Query 69854 GAAT--ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911 |||| | | | | | || || || || || || || ||||| | || || | Sbjct 10004892 GAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTG 10004949 Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || | | | || ||||| ||| || | ||||| | ||||| ||||| Sbjct 10004950 TTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAAGGAAACACGA 10005009 Query 69972 AGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 |||| || | | | || | || ||| | ||| || ||||| || ||||| | Sbjct 10005010 CGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGTGTGAAGTA 10005069 Query 70032 TTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCC 70091 || || || ||||| || ||||| | |||| || |||||| ||| ||||| Sbjct 10005070 GCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCCTCTCCATGGATTCC 10005129 Query 70092 TATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAA 70151 ||||| || ||||||| ||||||||| ||||| ||| | | || ||| | || | Sbjct 10005130 GATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCTCTTGAG 10005189 Query 70152 CAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 ||| || || ||||| || || || ||||||||||| || |||||| Sbjct 10005190 CAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAAGTC 10005240 >seq2 Length=21544594 Score = 127 bits (140), Expect = 3e-24 Identities = 454/703 (65%), Gaps = 9/703 (1%) Strand=Plus/Plus Query 39347 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTA 39406 || |||||||| || || || || |||| ||||| | |||||||| | ||| || || Sbjct 8575050 TTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAATGGGTTT 8575109 Query 39407 GTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCT 39466 | | || || | ||| || || || || | ||| | || || || || || Sbjct 8575110 TTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACGGTCCGCTACGAACTCA 8575169 Query 39467 ATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTT 39526 ||||| ||||| || || ||||| || || | || || || || || || || Sbjct 8575170 ATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTGACGGGCAGGGCATCGGTG 8575229 Query 39527 AGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC--GATGTTACTACCTCATCAC 39584 || ||||| | || ||| | || || || || ||| |||| | | ||| Sbjct 8575230 AGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCGATGATGCG--CTCGCGCT 8575287 Query 39585 TCGGTGGATGCAATAAATGTTTAAACATTAAGCA-GGCGAAGTCACAATGTAGGCCCTCA 39643 | ||| | |||| | || | ||||| | ||| ||| ||||| || || | |||||| Sbjct 8575288 TGGGTCGCTGCACCAGGTGCTGGAACATCA-GCACGGCAAAGTCGCAGTGCAAGCCCTCG 8575346 Query 39644 TCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGC 39703 || | | || | ||||| || || || | ||||||||| ||||| ||||| || ||| Sbjct 8575347 TCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCTTCTTAAGC 8575406 Query 39704 CAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACA 39763 || || |||| || || || ||||||||||| || || || ||||| || | Sbjct 8575407 CAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGCAAAGGCGATG 8575466 Query 39764 AGTCTCTCTCCGTAACTTGTATCATT--ATG-TATCCACTTCTGTGCCCAATCAGCTTTC 39820 | | ||| ||| || | | || | | ||||| | | ||||| || || || Sbjct 8575467 ATGCGCTCCCCGAAATTAGCCGACTTGGACGAGATCCAGGACAGGGCCCAGTCTGCCTTG 8575526 Query 39821 TTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCT 39880 ||| ||| ||||| ||||| ||||| || || || || | | | | ||| Sbjct 8575527 CGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCTCGCTGGTGTGGATCC 8575586 Query 39881 TTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATC 39940 | || || || || || | ||| ||||| || || || | ||| || || || ||| Sbjct 8575587 CGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATC 8575646 Query 39941 TGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCC 40000 || || ||||| || |||| ||| || || || || ||||| || |||| ||| || Sbjct 8575647 TGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTGAATCGCTCCACC 8575706 Query 40001 AAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | || || || || || |||||| |||||||| || |||| Sbjct 8575707 AGGTTCTCGTTTACGATGCCATCAGAGGCGGCAAAGAAGGCCA 8575749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686843380523160