Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1 329 4e-85
seq2 127 3e-24
>seq1
Length=23539531
Score = 329 bits (364), Expect = 4e-85
Identities = 1194/1851 (65%), Gaps = 38/1851 (2%)
Strand=Plus/Plus
Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433
|| |||||||||| | || || || || || ||||||||||| |||||||| |||
Sbjct 10003406 GTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTAAGA 10003465
Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493
||| |||| ||| || || || || || || ||| |||| ||||| | |
Sbjct 10003466 CCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTCGGCCACA 10003525
Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553
|| || || | ||| ||||| ||||| ||||| || || | ||| || |||||||| ||
Sbjct 10003526 TGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTTAATC 10003585
Query 68554 ATACTCTTT--TGAGGAATTTCCCAAATAGTCTT--AAAAATCTGTTTGATATCATCTGG 68609
| ||| |||| |||||||| | ||||| | | |||| | | |||||
Sbjct 10003586 GTGGACTTGACTGAG--ATTTCCCACACCGTCTTGTACAGATCTCGC----ACCTTCTGG 10003639
Query 68610 ---AAGG-CTCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCA 68664
| || ||| | |||||||| ||||| | ||||| || ||||| || ||
Sbjct 10003640 GGTATGGTCTCAATGTTTTGAATCGATCCCCTGCTCGATATGATCTGGTTCTTCATGTCG 10003699
Query 68665 TCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAAT 68724
|| | |||||| | || |||| | | | | ||| | || || | || |||
Sbjct 10003700 TCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAAT 10003759
Query 68725 TCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTA 68784
|| || || | |||| || ||||| || || |||| || || || | ||||||||
Sbjct 10003760 TCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTCATTG 10003819
Query 68785 TTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTA 68844
|| |||| || ||||| || |||||||| ||||| || || || | | || |
Sbjct 10003820 TTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGG 10003879
Query 68845 AGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACA 68904
| ||| || | | || || || | | | ||| ||||| || | | ||| ||
Sbjct 10003880 ACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACC 10003939
Query 68905 ACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCA 68964
| ||| | ||||| || | |||||| || || | || | || |||||
Sbjct 10003940 TTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCG 10003999
Query 68965 TAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTT 69024
|| || ||||| | || ||||| || || || || || || || || ||||| |||
Sbjct 10004000 TATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTT 10004059
Query 69025 TCGAAAATCTTCTTATT---GAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAA 69081
|| || |||| || ||| |||| | |||||| || ||| | || || | |
Sbjct 10004060 TCAAATATCTGCTGATTCAAGAGACCG---GCTTCTTCGCTTTCGTACGGGAAACGCATG 10004116
Query 69082 AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTT 69141
||||| || ||||| || |||||||||| ||||| || | || | ||| ||| |||
Sbjct 10004117 AGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATGCCTCAAATTG 10004176
Query 69142 GAACTTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200
|| ||| | || ||||| | ||||||||||| ||||| || || || || ||||||
Sbjct 10004177 GA-CTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTTTAGATTTTT 10004235
Query 69201 GACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA-----TA 69255
| |||| || || ||||| || || |||||| | |||| ||| |
Sbjct 10004236 GGTAACTATCTTTGTGACTTCCTTGAGCTTCTTGAAATCATA-CGTCT-TCTCCGGCGTG 10004293
Query 69256 ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA 69315
|| ||||| || || || | || || | || || ||||| | ||||| | | |
Sbjct 10004294 ACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAA 10004353
Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375
|||| | || || || || | || || || || || || || | ||| ||||| ||
Sbjct 10004354 TATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTG 10004413
Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435
||||| |||| || ||||||||| | || || ||||| | || || || | || |
Sbjct 10004414 CTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCC 10004473
Query 69436 TCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTC--TTGTAACGCTTCTCTT 69493
|| || || | ||| | | ||| || | || || ||| || |||||
Sbjct 10004474 TCAATGATGGCAAACCACAGGGATTGAGCCTTAAC--CGTTCGGTTGGCCCGACCCTCTT 10004531
Query 69494 TTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGAC 69553
|| |||| || ||| |||||||||||| ||||| || || | | || ||||
Sbjct 10004532 GCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGAC 10004591
Query 69554 ATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGAT 69613
| | | || ||||| | ||||| || | | ||| || |||||||| || ||||
Sbjct 10004592 ACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGAT 10004651
Query 69614 CGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttt 69673
|||| ||||| || || ||| ||||| | | | ||| ||||| || || || || |
Sbjct 10004652 CGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCT 10004711
Query 69674 ttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGA 69733
| || || || || ||||| | | ||| || ||||| ||||| ||||| || || | |
Sbjct 10004712 TCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGG 10004771
Query 69734 CTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCA 69793
| || || || || ||||||||||| | || | || |||||| |||| ||||
Sbjct 10004772 CACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTAAAGACCCTCA 10004831
Query 69794 GCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGC 69853
|||| |||| | ||||| || |||||||||| || |||| | | || |||| |
Sbjct 10004832 GCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCAC 10004891
Query 69854 GAAT--ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911
|||| | | | | | || || || || || || || ||||| | || || |
Sbjct 10004892 GAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTG 10004949
Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
|| || | | | || ||||| ||| || | ||||| | ||||| |||||
Sbjct 10004950 TTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAAGGAAACACGA 10005009
Query 69972 AGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031
|||| || | | | || | || ||| | ||| || ||||| || ||||| |
Sbjct 10005010 CGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGTGTGAAGTA 10005069
Query 70032 TTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCC 70091
|| || || ||||| || ||||| | |||| || |||||| ||| |||||
Sbjct 10005070 GCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCCTCTCCATGGATTCC 10005129
Query 70092 TATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAA 70151
||||| || ||||||| ||||||||| ||||| ||| | | || ||| | || |
Sbjct 10005130 GATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCTCTTGAG 10005189
Query 70152 CAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202
||| || || ||||| || || || ||||||||||| || ||||||
Sbjct 10005190 CAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAAGTC 10005240
>seq2
Length=21544594
Score = 127 bits (140), Expect = 3e-24
Identities = 454/703 (65%), Gaps = 9/703 (1%)
Strand=Plus/Plus
Query 39347 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTA 39406
|| |||||||| || || || || |||| ||||| | |||||||| | ||| || ||
Sbjct 8575050 TTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAATGGGTTT 8575109
Query 39407 GTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCT 39466
| | || || | ||| || || || || | ||| | || || || || ||
Sbjct 8575110 TTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACGGTCCGCTACGAACTCA 8575169
Query 39467 ATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTT 39526
||||| ||||| || || ||||| || || | || || || || || || ||
Sbjct 8575170 ATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTGACGGGCAGGGCATCGGTG 8575229
Query 39527 AGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC--GATGTTACTACCTCATCAC 39584
|| ||||| | || ||| | || || || || ||| |||| | | |||
Sbjct 8575230 AGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCGATGATGCG--CTCGCGCT 8575287
Query 39585 TCGGTGGATGCAATAAATGTTTAAACATTAAGCA-GGCGAAGTCACAATGTAGGCCCTCA 39643
| ||| | |||| | || | ||||| | ||| ||| ||||| || || | ||||||
Sbjct 8575288 TGGGTCGCTGCACCAGGTGCTGGAACATCA-GCACGGCAAAGTCGCAGTGCAAGCCCTCG 8575346
Query 39644 TCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGC 39703
|| | | || | ||||| || || || | ||||||||| ||||| ||||| || |||
Sbjct 8575347 TCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCTTCTTAAGC 8575406
Query 39704 CAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACA 39763
|| || |||| || || || ||||||||||| || || || ||||| || |
Sbjct 8575407 CAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGCAAAGGCGATG 8575466
Query 39764 AGTCTCTCTCCGTAACTTGTATCATT--ATG-TATCCACTTCTGTGCCCAATCAGCTTTC 39820
| | ||| ||| || | | || | | ||||| | | ||||| || || ||
Sbjct 8575467 ATGCGCTCCCCGAAATTAGCCGACTTGGACGAGATCCAGGACAGGGCCCAGTCTGCCTTG 8575526
Query 39821 TTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCT 39880
||| ||| ||||| ||||| ||||| || || || || | | | | |||
Sbjct 8575527 CGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCTCGCTGGTGTGGATCC 8575586
Query 39881 TTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATC 39940
| || || || || || | ||| ||||| || || || | ||| || || || |||
Sbjct 8575587 CGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATC 8575646
Query 39941 TGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCC 40000
|| || ||||| || |||| ||| || || || || ||||| || |||| ||| ||
Sbjct 8575647 TGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTGAATCGCTCCACC 8575706
Query 40001 AAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043
| || || || || || |||||| |||||||| || ||||
Sbjct 8575707 AGGTTCTCGTTTACGATGCCATCAGAGGCGGCAAAGAAGGCCA 8575749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686843380523160
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