Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq2 118 8e-22
seq1 114 1e-20
seq5 86.0 5e-12
>seq2
Length=21544594
Score = 118 bits (130), Expect = 8e-22
Identities = 239/353 (68%), Gaps = 9/353 (3%)
Strand=Plus/Minus
Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990
|| |||||||| || || || || || || ||||| || || | || ||||| ||||||
Sbjct 8575672 GAGGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTAC 8575613
Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA---AGCATCGATTGTTTAAT 44047
||| || |||| || || |||||| ||| ||| || || | | |||| ||
Sbjct 8575612 AGTGTTTTGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACC---TGTTCAAC 8575556
Query 44048 GCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT 44107
|| || ||||| | || || | || | || |||||||||||||| |||||
Sbjct 8575555 GCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTCG 8575496
Query 44108 TCAAA---TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTC 44164
|| || | | ||| || || || | |||| ||||| | ||||| ||||| |||
Sbjct 8575495 TCCAAGTCGGCTAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTC 8575436
Query 44165 TTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTG 44224
|| || || || |||| || ||| | ||||| || ||| |||||||||| |||
Sbjct 8575435 TTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTG 8575376
Query 44225 ACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277
|| || || || ||| | || ||| || || ||||| || ||||| |||||
Sbjct 8575375 ACCTTCTCCAACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGC 8575323
>seq1
Length=23539531
Score = 114 bits (126), Expect = 1e-20
Identities = 276/418 (66%), Gaps = 6/418 (1%)
Strand=Plus/Minus
Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062
|||||| || || ||| || ||||| || |||| | | |||||| |||| ||
Sbjct 2846357 CCGACGCATCATCATGTCGGCTTGGAATCCGCTGGACATCCCAAAGATGGCCCTGCCGCC 2846298
Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAAT------GGTGAACTGTCATGTCAATT 41116
|| || | || ||||||||||| | | | ||||| ||||| || || |
Sbjct 2846297 GTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCGGTGAGCTGTCGTGCCAGCT 2846238
Query 41117 GTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCT 41176
|| || ||| | |||||||| || || || || || ||||| || || || ||
Sbjct 2846237 CTACCAGAGAAGCGCCGACATGGGCCTGGGCGTACCCTTCAACATCGCCTCCTACGCCCT 2846178
Query 41177 GCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTT 41236
|||||| | |||||||| || || || | | || || || || ||||||||||| |
Sbjct 2846177 GCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGCCGGGCGACTTTGTTCACACCAT 2846118
Query 41237 AGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAA 41296
|| ||| ||| | ||| | || ||| |||||||| | | || |||||| || |
Sbjct 2846117 GGGCGATACACACGTCTACCTCAACCACGTAGAGCCGCTGAAGGAGCAACTGGAGCGCAC 2846058
Query 41297 ACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTG 41356
||| |||| ||||| | ||| | |||||||| || | |||| || || || |
Sbjct 2846057 ACCGCGACCCTTTCCCAAGCTGATCATTAAACGTCAGGTGCAGGACATCGAGGACTTCCG 2845998
Query 41357 CATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATG 41414
| |||| || |||| | ||| |||||||| | || || ||| | ||||| |||
Sbjct 2845997 CTTCGAGGACTTTGAGATAGTCGACTACAATCCACATCCAAAGATCAAAATGGAGATG 2845940
>seq5
Length=27160941
Score = 86.0 bits (94), Expect = 5e-12
Identities = 327/509 (64%), Gaps = 12/509 (2%)
Strand=Plus/Plus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| || || ||||| || | ||| | | || || || ||| |||| |||| |||
Sbjct 11517446 CCCAAGATCGTGAATGGACCGCAGATCCTGGACAAGTACGTGGGTGAATCAGAAGCCAAT 11517505
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548
| || || ||||||| || || || || || |||| || || || | || |||
Sbjct 11517506 ATCCGGCGACTGTTTGCCGAGGCCGAGGAGGAGGAAAAGCGCTTGGGACCGAACAGTGGA 11517565
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC------T 19602
||||||| || || | || || | ||||| || || ||| | || || |
Sbjct 11517566 CTGCACATCATCATCTTCGACGAGATCGACGCCATTTGCAAGGCTCGCGGATCCGTGGCT 11517625
Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
||| | ||| || || ||||| || ||||||||||| || | || | ||||| ||
Sbjct 11517626 GGTAATAGTGGTGTCCACGACACGGTCGTCAATCAACTGCTAGCCAAGATCGACGGCGTG 11517685
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722
| || |||| || || | || || || ||||| || | | ||| | || ||
Sbjct 11517686 GAGCAGTTGAACAACATCCTGGTGATAGGAATGACCAACCGGCGGGACATGATCGATGAG 11517745
Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782
||| | | ||||| || || |||||| | | || || || | ||| ||| | ||
Sbjct 11517746 GCCCTGCTGCGACCTGGACGCTTGGAAGTGCAAATGGAGATCAGCTTGCCCAACGAGCAG 11517805
Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840
|| || || | || | ||||| | ||| ||| | |||||| | |||| ||
Sbjct 11517806 GGTCGCGTCCAGATCCTGAACATCC--ACACCAAGCGTATGCGAGACTTTAACAAGATAG 11517863
Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899
| ||||||| || | | || || || || || || || |||| || ||||||||
Sbjct 11517864 CTAACGATGTGGA-CAACAATGAGATCGCGGCTAGGACAAAGAACTTCAGTGGCGCAGAG 11517922
Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATC 19928
| ||||| | || || || ||||||||
Sbjct 11517923 TTGGAGGGCCTGGTTAGAGCGGCCCAATC 11517951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397419093602095
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |