Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 118 8e-22 seq1 114 1e-20 seq5 86.0 5e-12 >seq2 Length=21544594 Score = 118 bits (130), Expect = 8e-22 Identities = 239/353 (68%), Gaps = 9/353 (3%) Strand=Plus/Minus Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 || |||||||| || || || || || || ||||| || || | || ||||| |||||| Sbjct 8575672 GAGGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTAC 8575613 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA---AGCATCGATTGTTTAAT 44047 ||| || |||| || || |||||| ||| ||| || || | | |||| || Sbjct 8575612 AGTGTTTTGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACC---TGTTCAAC 8575556 Query 44048 GCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT 44107 || || ||||| | || || | || | || |||||||||||||| ||||| Sbjct 8575555 GCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTCG 8575496 Query 44108 TCAAA---TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTC 44164 || || | | ||| || || || | |||| ||||| | ||||| ||||| ||| Sbjct 8575495 TCCAAGTCGGCTAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTC 8575436 Query 44165 TTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTG 44224 || || || || |||| || ||| | ||||| || ||| |||||||||| ||| Sbjct 8575435 TTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTG 8575376 Query 44225 ACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 || || || || ||| | || ||| || || ||||| || ||||| ||||| Sbjct 8575375 ACCTTCTCCAACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGC 8575323 >seq1 Length=23539531 Score = 114 bits (126), Expect = 1e-20 Identities = 276/418 (66%), Gaps = 6/418 (1%) Strand=Plus/Minus Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062 |||||| || || ||| || ||||| || |||| | | |||||| |||| || Sbjct 2846357 CCGACGCATCATCATGTCGGCTTGGAATCCGCTGGACATCCCAAAGATGGCCCTGCCGCC 2846298 Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAAT------GGTGAACTGTCATGTCAATT 41116 || || | || ||||||||||| | | | ||||| ||||| || || | Sbjct 2846297 GTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCGGTGAGCTGTCGTGCCAGCT 2846238 Query 41117 GTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCT 41176 || || ||| | |||||||| || || || || || ||||| || || || || Sbjct 2846237 CTACCAGAGAAGCGCCGACATGGGCCTGGGCGTACCCTTCAACATCGCCTCCTACGCCCT 2846178 Query 41177 GCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTT 41236 |||||| | |||||||| || || || | | || || || || ||||||||||| | Sbjct 2846177 GCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGCCGGGCGACTTTGTTCACACCAT 2846118 Query 41237 AGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAA 41296 || ||| ||| | ||| | || ||| |||||||| | | || |||||| || | Sbjct 2846117 GGGCGATACACACGTCTACCTCAACCACGTAGAGCCGCTGAAGGAGCAACTGGAGCGCAC 2846058 Query 41297 ACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTG 41356 ||| |||| ||||| | ||| | |||||||| || | |||| || || || | Sbjct 2846057 ACCGCGACCCTTTCCCAAGCTGATCATTAAACGTCAGGTGCAGGACATCGAGGACTTCCG 2845998 Query 41357 CATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATG 41414 | |||| || |||| | ||| |||||||| | || || ||| | ||||| ||| Sbjct 2845997 CTTCGAGGACTTTGAGATAGTCGACTACAATCCACATCCAAAGATCAAAATGGAGATG 2845940 >seq5 Length=27160941 Score = 86.0 bits (94), Expect = 5e-12 Identities = 327/509 (64%), Gaps = 12/509 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || || ||||| || | ||| | | || || || ||| |||| |||| ||| Sbjct 11517446 CCCAAGATCGTGAATGGACCGCAGATCCTGGACAAGTACGTGGGTGAATCAGAAGCCAAT 11517505 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || || ||||||| || || || || || |||| || || || | || ||| Sbjct 11517506 ATCCGGCGACTGTTTGCCGAGGCCGAGGAGGAGGAAAAGCGCTTGGGACCGAACAGTGGA 11517565 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC------T 19602 ||||||| || || | || || | ||||| || || ||| | || || | Sbjct 11517566 CTGCACATCATCATCTTCGACGAGATCGACGCCATTTGCAAGGCTCGCGGATCCGTGGCT 11517625 Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 ||| | ||| || || ||||| || ||||||||||| || | || | ||||| || Sbjct 11517626 GGTAATAGTGGTGTCCACGACACGGTCGTCAATCAACTGCTAGCCAAGATCGACGGCGTG 11517685 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||| || || | || || || ||||| || | | ||| | || || Sbjct 11517686 GAGCAGTTGAACAACATCCTGGTGATAGGAATGACCAACCGGCGGGACATGATCGATGAG 11517745 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 ||| | | ||||| || || |||||| | | || || || | ||| ||| | || Sbjct 11517746 GCCCTGCTGCGACCTGGACGCTTGGAAGTGCAAATGGAGATCAGCTTGCCCAACGAGCAG 11517805 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840 || || || | || | ||||| | ||| ||| | |||||| | |||| || Sbjct 11517806 GGTCGCGTCCAGATCCTGAACATCC--ACACCAAGCGTATGCGAGACTTTAACAAGATAG 11517863 Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899 | ||||||| || | | || || || || || || || |||| || |||||||| Sbjct 11517864 CTAACGATGTGGA-CAACAATGAGATCGCGGCTAGGACAAAGAACTTCAGTGGCGCAGAG 11517922 Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATC 19928 | ||||| | || || || |||||||| Sbjct 11517923 TTGGAGGGCCTGGTTAGAGCGGCCCAATC 11517951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397419093602095