Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq1 259 4e-64
>seq1
Length=23539531
Score = 259 bits (286), Expect = 4e-64
Identities = 1007/1568 (64%), Gaps = 41/1568 (3%)
Strand=Plus/Plus
Query 130412 ACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTTTTG 130471
|||||||| ||||||||||| | || ||||||||||||| ||| ||||| || |||||
Sbjct 10003403 ACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTA 10003462
Query 130472 AGTCCAATTTTGTGTCCA----TAATTGTGGATGCTGCACATTGTTTGGTAATTGGGTTG 130527
|| || ||| ||| ||| ||| ||| || || || || || |
Sbjct 10003463 AGACCTGCTTT----CCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTC 10003518
Query 130528 CGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCAT 130587
||||| |||||||| ||| || ||||| || || || || | || || |||||
Sbjct 10003519 GGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCAT 10003578
Query 130588 GTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTT 130647
| | | ||| || | || ||||| | |||||||| ||||| | | | |
Sbjct 10003579 TTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGCACCTTCTG 10003638
Query 130648 GGGTATGCGCGCAATCGATTGAA-CGCTACCGTTGTTGGCTATAATTTCGTTGCGCATAC 130706
||||||| | |||| ||||| || | || | | | | ||| || | ||| |||
Sbjct 10003639 GGGTATGGTCTCAATGTTTTGAATCGATCCCCT-GCTCGATATGATCTGGTTCTTCATGT 10003697
Query 130707 TTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAA 130766
| || |||| | || | || || | |||||||| || | | || |
Sbjct 10003698 CGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGA 10003757
Query 130767 AATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGT 130826
| || || | ||| || || | ||| ||||| | ||| |||| || |||||||| |
Sbjct 10003758 ATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTCAT 10003817
Query 130827 TGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTAC 130886
||||||| | ||| || ||||||| ||| ||||||||| || || | || || || |
Sbjct 10003818 TGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCC 10003877
Query 130887 GAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTT 130946
| | ||||||| || | || |||||||| | ||| ||||| || || |||
Sbjct 10003878 GGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAG----GTTCGTT 10003933
Query 130947 TG-ACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAAC 131005
| || |||| |||||| || | || | || ||||| || | || ||| ||| |
Sbjct 10003934 GGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAG 10003993
Query 131006 GATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAA 131065
| |||||| |||||| | ||||| ||| ||| |||||||| || || || |||
Sbjct 10003994 GTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAA 10004053
Query 131066 ATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTC 131125
|| ||||| || || | ||| || | |||| | ||| ||||| || || |
Sbjct 10004054 ATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTTCGTACGGGAAACGC 10004113
Query 131126 ATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAA 131185
|| | ||| || || || |||| ||||| || |||| |||||| || | ||| | |||
Sbjct 10004114 ATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATGCCTCAAA 10004173
Query 131186 TTACATTTACGCGAACATTCGGTG-GGATAAAGGTTAATGTCAATTATTTTGTTTAAATT 131244
|| | || | | | | | | |||||| || || |||||||| ||||||| |||
Sbjct 10004174 TTGGACTTCCTTGC-CTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTTTAGATT 10004232
Query 131245 GCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAG 131304
|| || | |||||| || | || | ||||||| |||| | || |
Sbjct 10004233 TTTGGTAACTATCTTTGTGACTTCCTTGAGCTTCTTGAAATCATACGTCT---TCTCCGG 10004289
Query 131305 GTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATC 131364
| || || || | || || |||| || || ||||| | || ||
Sbjct 10004290 CGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGA 10004349
Query 131365 GCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTG 131424
| |||| | ||| ||||| | |||||| || |||| ||| |||||||| | ||| || ||
Sbjct 10004350 GGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATTCTGCTG 10004409
Query 131425 ATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTG 131484
||||| || || | ||||||| | | |||||| || | || || || |||||
Sbjct 10004410 GTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTG 10004469
Query 131485 AGTTTCAATAATGT--ATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCG 131542
| ||||| ||| | | | || | || |||| || | || ||||||
Sbjct 10004470 CGCCTCAATGATGGCAAACCACAGGGATT--GAGCC-----TTAACCGTTCGGTTGGCCC 10004522
Query 131543 ---CGTTTT--TCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACT--GTC 131595
| | || ||||| || ||||||| | |||| || | | ||| || ||| ||
Sbjct 10004523 GACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCAC--ACTTCGTG 10004580
Query 131596 CAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTT 131655
| | ||||| | | ||| ||||| |||||||| | ||||| || || || ||
Sbjct 10004581 GAGACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTT 10004640
Query 131656 CATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGT 131715
||| || | ||| || | ||| | ||||| |||||||| | || ||||||||| |
Sbjct 10004641 CATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTT 10004700
Query 131716 ACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATA 131775
||| | | || |||| | | || || || | |||| ||||||||||||| |||
Sbjct 10004701 GCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATA 10004760
Query 131776 CACTGCCATTGCGCCTTTGCGCTTACCGCCT---TGATTAACATGACGAACCATGTTGTT 131832
| || | || || |||||| |||||| |||| |||| |||| ||| || ||
Sbjct 10004761 AATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATT 10004820
Query 131833 GTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCT 131892
| || | || |||||| |||| || |||| | ||||| |||| ||| || |
Sbjct 10004821 AAAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGT 10004880
Query 131893 GCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAG 131952
||| || || | || || ||||||||||| || || ||| || | || ||||| |
Sbjct 10004881 GCCCTTTGCACGAATGCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCAT 10004940
Query 131953 TGCGCATT 131960
|||||||
Sbjct 10004941 GGCGCATT 10004948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424894942052328
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |