Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 259 4e-64 >seq1 Length=23539531 Score = 259 bits (286), Expect = 4e-64 Identities = 1007/1568 (64%), Gaps = 41/1568 (3%) Strand=Plus/Plus Query 130412 ACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTTTTG 130471 |||||||| ||||||||||| | || ||||||||||||| ||| ||||| || ||||| Sbjct 10003403 ACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTA 10003462 Query 130472 AGTCCAATTTTGTGTCCA----TAATTGTGGATGCTGCACATTGTTTGGTAATTGGGTTG 130527 || || ||| ||| ||| ||| ||| || || || || || | Sbjct 10003463 AGACCTGCTTT----CCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTC 10003518 Query 130528 CGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCAT 130587 ||||| |||||||| ||| || ||||| || || || || | || || ||||| Sbjct 10003519 GGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCAT 10003578 Query 130588 GTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTT 130647 | | | ||| || | || ||||| | |||||||| ||||| | | | | Sbjct 10003579 TTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGCACCTTCTG 10003638 Query 130648 GGGTATGCGCGCAATCGATTGAA-CGCTACCGTTGTTGGCTATAATTTCGTTGCGCATAC 130706 ||||||| | |||| ||||| || | || | | | | ||| || | ||| ||| Sbjct 10003639 GGGTATGGTCTCAATGTTTTGAATCGATCCCCT-GCTCGATATGATCTGGTTCTTCATGT 10003697 Query 130707 TTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAA 130766 | || |||| | || | || || | |||||||| || | | || | Sbjct 10003698 CGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGA 10003757 Query 130767 AATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGT 130826 | || || | ||| || || | ||| ||||| | ||| |||| || |||||||| | Sbjct 10003758 ATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTCAT 10003817 Query 130827 TGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTAC 130886 ||||||| | ||| || ||||||| ||| ||||||||| || || | || || || | Sbjct 10003818 TGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCC 10003877 Query 130887 GAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTT 130946 | | ||||||| || | || |||||||| | ||| ||||| || || ||| Sbjct 10003878 GGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAG----GTTCGTT 10003933 Query 130947 TG-ACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAAC 131005 | || |||| |||||| || | || | || ||||| || | || ||| ||| | Sbjct 10003934 GGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAG 10003993 Query 131006 GATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAA 131065 | |||||| |||||| | ||||| ||| ||| |||||||| || || || ||| Sbjct 10003994 GTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAA 10004053 Query 131066 ATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTC 131125 || ||||| || || | ||| || | |||| | ||| ||||| || || | Sbjct 10004054 ATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTTCGTACGGGAAACGC 10004113 Query 131126 ATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAA 131185 || | ||| || || || |||| ||||| || |||| |||||| || | ||| | ||| Sbjct 10004114 ATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATGCCTCAAA 10004173 Query 131186 TTACATTTACGCGAACATTCGGTG-GGATAAAGGTTAATGTCAATTATTTTGTTTAAATT 131244 || | || | | | | | | |||||| || || |||||||| ||||||| ||| Sbjct 10004174 TTGGACTTCCTTGC-CTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTTTAGATT 10004232 Query 131245 GCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAG 131304 || || | |||||| || | || | ||||||| |||| | || | Sbjct 10004233 TTTGGTAACTATCTTTGTGACTTCCTTGAGCTTCTTGAAATCATACGTCT---TCTCCGG 10004289 Query 131305 GTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATC 131364 | || || || | || || |||| || || ||||| | || || Sbjct 10004290 CGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGA 10004349 Query 131365 GCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTG 131424 | |||| | ||| ||||| | |||||| || |||| ||| |||||||| | ||| || || Sbjct 10004350 GGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATTCTGCTG 10004409 Query 131425 ATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTG 131484 ||||| || || | ||||||| | | |||||| || | || || || ||||| Sbjct 10004410 GTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTG 10004469 Query 131485 AGTTTCAATAATGT--ATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCG 131542 | ||||| ||| | | | || | || |||| || | || |||||| Sbjct 10004470 CGCCTCAATGATGGCAAACCACAGGGATT--GAGCC-----TTAACCGTTCGGTTGGCCC 10004522 Query 131543 ---CGTTTT--TCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACT--GTC 131595 | | || ||||| || ||||||| | |||| || | | ||| || ||| || Sbjct 10004523 GACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCAC--ACTTCGTG 10004580 Query 131596 CAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTT 131655 | | ||||| | | ||| ||||| |||||||| | ||||| || || || || Sbjct 10004581 GAGACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTT 10004640 Query 131656 CATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGT 131715 ||| || | ||| || | ||| | ||||| |||||||| | || ||||||||| | Sbjct 10004641 CATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTT 10004700 Query 131716 ACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATA 131775 ||| | | || |||| | | || || || | |||| ||||||||||||| ||| Sbjct 10004701 GCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATA 10004760 Query 131776 CACTGCCATTGCGCCTTTGCGCTTACCGCCT---TGATTAACATGACGAACCATGTTGTT 131832 | || | || || |||||| |||||| |||| |||| |||| ||| || || Sbjct 10004761 AATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATT 10004820 Query 131833 GTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCT 131892 | || | || |||||| |||| || |||| | ||||| |||| ||| || | Sbjct 10004821 AAAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGT 10004880 Query 131893 GCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAG 131952 ||| || || | || || ||||||||||| || || ||| || | || ||||| | Sbjct 10004881 GCCCTTTGCACGAATGCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCAT 10004940 Query 131953 TGCGCATT 131960 ||||||| Sbjct 10004941 GGCGCATT 10004948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424894942052328