Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 196 6e-45 >seq1 Length=23539531 Score = 196 bits (216), Expect = 6e-45 Identities = 644/989 (65%), Gaps = 19/989 (2%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| || ||||| || || ||| ||||||| || |||| || || || || || Sbjct 10003783 GTATATGTTCGTGGTGTACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGA 10003842 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| || || | | || ||| || | ||| | || ||| ||| || Sbjct 10003843 TGCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTC 10003902 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATGTCAAACTG 110883 ||| | | |||||| | || || ||| |||||| |||||||||| |||| Sbjct 10003903 CTTCAATTTCTGCCAGTCCCAC---AGGTTCGTTGGCACCTTGTCCCACATGTCGTACTG 10003959 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 | | |||| | | | || ||||| ||||||| || | ||||| || | || Sbjct 10003960 CAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGC 10004019 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 || ||| ||||| || |||| || | | || || |||||||| || | ||||| Sbjct 10004020 CAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAA 10004079 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 |||||| || || | | | | || | ||| || |||| |||| || Sbjct 10004080 GAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCC 10004139 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT--CAACG 111121 |||| ||| | || | || | || | || ||| ||||| | || ||| || || Sbjct 10004140 CTGAATACCAATGCCCACGGGACGATGCCTCAAATTGGACTTCCTTGCC-TCTGGCAGCG 10004198 Query 111122 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181 | |||| |||| | ||||| | |||||||||||||||||| |||||||||| ||| Sbjct 10004199 G-ATAATAATTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACTTCC 10004257 Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241 | || || | ||||| | || |||| |||| || | |||||||| Sbjct 10004258 TTGAGCTTCTTGAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATG 10004314 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || ||||| ||||| || || |||||||| | || || | ||||| || || Sbjct 10004315 GAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCAC 10004374 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 |||||| | |||||| || || | ||||| ||||| |||||| ||||||| || ||| Sbjct 10004375 AAGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10004434 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-- 111419 ||| |||||||||| || | || |||||| || | | | || || ||| | Sbjct 10004435 TTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGG 10004494 Query 111420 CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 111479 || | || || | ||||||||| ||||| |||||| || ||| || Sbjct 10004495 GATTG--AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCT 10004552 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539 ||| || || || ||| | | ||| ||||||||| ||||| || || | || | Sbjct 10004553 TTTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCACATGAGCG 10004612 Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 |||| | ||| |||| || || |||||||| || || || |||||||||| ||| Sbjct 10004613 ACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAA 10004672 Query 111600 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCC 111658 | ||||| | ||| |||||| | || ||| || | | || |||||||| Sbjct 10004673 ACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTT-CTTCTTCAGTTCCAGGAACTCA 10004731 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATA 111687 | || ||||| |||||| || || ||||| Sbjct 10004732 AAGACATCCGAGTGCCAGGGTTCCAGATA 10004760 Score = 120 bits (132), Expect = 4e-22 Identities = 186/263 (71%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 ||||| || ||| | | || |||||||||||||| | ||||||||| || || |||||| Sbjct 18945618 TCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTTATGTTG 18945677 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924 || | ||| | | | | ||||| || ||||| || ||| || ||||| || || || Sbjct 18945678 TTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTCC 18945736 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 ||||||||| || ||| | ||||| || || | | | ||| |||||||||| ||| Sbjct 18945737 GTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCACG 18945796 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 ||| ||| | | ||| |||| |||| || |||| ||| ||||| | ||||| Sbjct 18945797 CTTGTCATTCCTTTTGAAACAAGTGAACATAACCTTCCGCTGACCCGGCTTCAAGCCATC 18945856 Query 182045 CGCCATATGGGCAATAGAGCGCT 182067 | ||| | | ||| ||||||| Sbjct 18945857 CACCAGACTAGGAATGGAGCGCT 18945879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627972187802400