Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1 196 6e-45
>seq1
Length=23539531
Score = 196 bits (216), Expect = 6e-45
Identities = 644/989 (65%), Gaps = 19/989 (2%)
Strand=Plus/Plus
Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766
||| ||||| || ||||| || || ||| ||||||| || |||| || || || || ||
Sbjct 10003783 GTATATGTTCGTGGTGTACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGA 10003842
Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826
|| || ||||| || || | | || ||| || | ||| | || ||| ||| ||
Sbjct 10003843 TGCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTC 10003902
Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATGTCAAACTG 110883
||| | | |||||| | || || ||| |||||| |||||||||| ||||
Sbjct 10003903 CTTCAATTTCTGCCAGTCCCAC---AGGTTCGTTGGCACCTTGTCCCACATGTCGTACTG 10003959
Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943
| | |||| | | | || ||||| ||||||| || | ||||| || | ||
Sbjct 10003960 CAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGC 10004019
Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003
|| ||| ||||| || |||| || | | || || |||||||| || | |||||
Sbjct 10004020 CAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAA 10004079
Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063
|||||| || || | | | | || | ||| || |||| |||| ||
Sbjct 10004080 GAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCC 10004139
Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT--CAACG 111121
|||| ||| | || | || | || | || ||| ||||| | || ||| || ||
Sbjct 10004140 CTGAATACCAATGCCCACGGGACGATGCCTCAAATTGGACTTCCTTGCC-TCTGGCAGCG 10004198
Query 111122 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181
| |||| |||| | ||||| | |||||||||||||||||| |||||||||| |||
Sbjct 10004199 G-ATAATAATTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACTTCC 10004257
Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241
| || || | ||||| | || |||| |||| || | ||||||||
Sbjct 10004258 TTGAGCTTCTTGAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATG 10004314
Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301
|| ||||| ||||| || || |||||||| | || || | ||||| || ||
Sbjct 10004315 GAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCAC 10004374
Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361
|||||| | |||||| || || | ||||| ||||| |||||| ||||||| || |||
Sbjct 10004375 AAGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10004434
Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-- 111419
||| |||||||||| || | || |||||| || | | | || || ||| |
Sbjct 10004435 TTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGG 10004494
Query 111420 CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 111479
|| | || || | ||||||||| ||||| |||||| || ||| ||
Sbjct 10004495 GATTG--AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCT 10004552
Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539
||| || || || ||| | | ||| ||||||||| ||||| || || | || |
Sbjct 10004553 TTTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCACATGAGCG 10004612
Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599
|||| | ||| |||| || || |||||||| || || || |||||||||| |||
Sbjct 10004613 ACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAA 10004672
Query 111600 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCC 111658
| ||||| | ||| |||||| | || ||| || | | || ||||||||
Sbjct 10004673 ACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTT-CTTCTTCAGTTCCAGGAACTCA 10004731
Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATA 111687
| || ||||| |||||| || || |||||
Sbjct 10004732 AAGACATCCGAGTGCCAGGGTTCCAGATA 10004760
Score = 120 bits (132), Expect = 4e-22
Identities = 186/263 (71%), Gaps = 2/263 (1%)
Strand=Plus/Plus
Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865
||||| || ||| | | || |||||||||||||| | ||||||||| || || ||||||
Sbjct 18945618 TCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTTATGTTG 18945677
Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924
|| | ||| | | | | ||||| || ||||| || ||| || ||||| || || ||
Sbjct 18945678 TTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTCC 18945736
Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984
||||||||| || ||| | ||||| || || | | | ||| |||||||||| |||
Sbjct 18945737 GTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCACG 18945796
Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044
||| ||| | | ||| |||| |||| || |||| ||| ||||| | |||||
Sbjct 18945797 CTTGTCATTCCTTTTGAAACAAGTGAACATAACCTTCCGCTGACCCGGCTTCAAGCCATC 18945856
Query 182045 CGCCATATGGGCAATAGAGCGCT 182067
| ||| | | ||| |||||||
Sbjct 18945857 CACCAGACTAGGAATGGAGCGCT 18945879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627972187802400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |