Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1 208 9e-49
seq2 143 3e-29
>seq1
Length=23539531
Score = 208 bits (230), Expect = 9e-49
Identities = 639/983 (65%), Gaps = 9/983 (1%)
Strand=Plus/Plus
Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241
|| || || || ||||| ||||| ||| | |||||||| |||| || || ||||| ||
Sbjct 10003784 TATATGTTCGTGGTGTACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGAT 10003843
Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301
|| ||||||||||| || | ||| || ||| |||| ||| | | | ||||| |||
Sbjct 10003844 GCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTCC 10003903
Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 118361
|| | | |||||| | | | ||| | || | |||||| || |||| |
Sbjct 10003904 TTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAA 10003963
Query 118362 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 118421
|| |||| | | | || ||||| | || || ||||| || || || |||| |
Sbjct 10003964 ATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGT 10004023
Query 118422 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCC 118481
||| |||| || || | ||| | | || || |||||||| || | |||||
Sbjct 10004024 TCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGA 10004083
Query 118482 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 118541
||| || ||| || ||| || || | ||| || |||| |||| || ||
Sbjct 10004084 CCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGA 10004143
Query 118542 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC-CACGGGATA 118600
| ||| | ||| | || ||||| |||| ||| ||||||| || ||| || |||||
Sbjct 10004144 ATACCAATGCCCACGGGACGATGCCTCAAATTGGACTTCCTTGCC-TCTGGCAGCGGATA 10004202
Query 118601 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 118660
| |||| |||| || | | | |||||||||||||| || | |||||||| ||| | ||
Sbjct 10004203 ATAATTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACTTCCTTGAG 10004262
Query 118661 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 118720
||| | | ||||| | | |||| |||| || | |||||||| || ||
Sbjct 10004263 CTTCTTGAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGC 10004319
Query 118721 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT 118780
|| || || || | |||||||| | || || | |||||||||||||||||
Sbjct 10004320 CAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTT 10004379
Query 118781 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 118840
| |||||||||||| | |||| || || ||| |||| || || |||||| |
Sbjct 10004380 GCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAA 10004439
Query 118841 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC--CAGACATCG 118898
|||||||| || | || |||||| ||| | || | || || | ||| || |
Sbjct 10004440 GAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTG 10004499
Query 118899 GCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCA 118958
||| || || |||||| || ||||||| |||||| || ||| || |||
Sbjct 10004500 --AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCG 10004557
Query 118959 AACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 119018
|| || || ||| | || ||| ||||| ||| | ||||| | ||| |||||
Sbjct 10004558 AATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCACATGAGCGACCAA 10004617
Query 119019 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGA 119078
| ||| |||| || || ||||||||||| || || ||||| || || | || |||
Sbjct 10004618 TCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGA 10004677
Query 119079 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 119138
|| || |||| ||||| | ||| || || |||| || || | || |
Sbjct 10004678 TCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACA 10004737
Query 119139 TCCGCGTGCCACGGTTCCAGGTA 119161
|||| |||||| |||||||| ||
Sbjct 10004738 TCCGAGTGCCAGGGTTCCAGATA 10004760
Score = 118 bits (130), Expect = 1e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123
||||||||| ||| | | || || ||||||||||| | ||||||||| ||||| || ||
Sbjct 18945617 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTTATGTT 18945676
Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182
||| | ||||| | | | ||||| || || || || ||| || ||||| || || |
Sbjct 18945677 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 18945735
Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCAT 179242
|||| ||||| |||||| | |||||||| || | | | ||| |||||||||| ||||
Sbjct 18945736 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 18945795
Query 179243 CCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTT 179279
|||| ||| | | ||| || | |||| |||||
Sbjct 18945796 GCTTGTCATTCCTTTTGAAACAAGTGAACATAACCTT 18945832
>seq2
Length=21544594
Score = 143 bits (158), Expect = 3e-29
Identities = 287/419 (68%), Gaps = 6/419 (1%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATAT--TCTCCA 129785
|| ||| | ||| ||| ||||| ||||| ||||| || |||| || ||||| ||||||
Sbjct 8575035 TACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCA-GC-GATATCATCTCCA 8575092
Query 129786 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845
| || | ||||||||| || | ||| | || | || || | || ||| | ||
Sbjct 8575093 TGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAAC 8575152
Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905
| |||| ||| |||||||||||| |||||| ||| ||||||| ||||| | ||
Sbjct 8575153 GGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTGA 8575212
Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965
|| || || || || |||| ||| ||||||| |||| || || || | ||| ||
Sbjct 8575213 CGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCGA 8575272
Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTCC 130024
||| || || || || ||| | | || || ||| | ||||||||| ||
Sbjct 8575273 TGATGCGCT-CGCGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAGCACGGCAAAGTCG 8575331
Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084
||| | |||||||| || ||||| || || || |||||| || || ||||| |||
Sbjct 8575332 CAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGA 8575391
Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
|| |||||||| | ||||||||| | || ||| ||||||||| ||||||||
Sbjct 8575392 CCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCAC 8575450
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618376301777640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |