Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2 96.9 4e-15
seq1 95.1 1e-14
>seq2
Length=21544594
Score = 96.9 bits (106), Expect = 4e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863
||||| || |||| ||||| || ||||| ||||||||| || |||| | |
Sbjct 8575474 GAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCC 8575415
Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923
|||| ||||| |||||||| ||||| ||||| || | ||||||||||||||| |||
Sbjct 8575414 ATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTCCAACGAGCTGATC 8575355
Query 94924 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 94959
||||| |||||||| | ||| || ||||| |||
Sbjct 8575354 TCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG 8575319
>seq1
Length=23539531
Score = 95.1 bits (104), Expect = 1e-14
Identities = 170/246 (69%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 168457 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 168516
||| || || ||| | | || |||||||| ||||| | |||||||| ||||| || ||
Sbjct 18945617 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTTATGTT 18945676
Query 168517 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCAC 168575
||| | ||||| | | | |||| || || || || || || || || || || |
Sbjct 18945677 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 18945735
Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 168635
|||||||||| || | |||| || || || | | | ||| ||||| |||| ||||
Sbjct 18945736 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 18945795
Query 168636 CCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 168695
|||| |||| | | ||| || | | |||||||||| || || ||||| | ||||
Sbjct 18945796 GCTTGTCATTCCTTTTGAAACAAGTGAACATAACCTTCCGCTGACCCGGCTTCAAGCCAT 18945855
Query 168696 CCGCCA 168701
|| |||
Sbjct 18945856 CCACCA 18945861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583205251699560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |