Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 192 6e-44
seq2 105 7e-18
>seq1
Length=23539531
Score = 192 bits (212), Expect = 6e-44
Identities = 500/757 (66%), Gaps = 8/757 (1%)
Strand=Plus/Plus
Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116
|| |||| |||||| || || |||| ||||| ||| || | |||||| ||||||
Sbjct 10004315 GAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCAC 10004374
Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176
|| || |||| |||||||| | |||| ||||||||||||| ||| || ||||||
Sbjct 10004375 AAGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10004434
Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236
||| || ||||||||| | |||||||| || || || | | | | ||| | |
Sbjct 10004435 TTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGG 10004494
Query 79237 TCCCGGGCCCGGACAACCTTC--TTGTACCGACCCTGTGCGACGTACGTCCGGTACAACT 79294
| ||| || | ||| ||| |||||||| | |||| || ||||| ||
Sbjct 10004495 GATTGAGCCTTAAC--CGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCT 10004552
Query 79295 CGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354
| ||| | || || | || ||| | || || || |||| ||| |||||||| ||
Sbjct 10004553 TTTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCACATGAGCG 10004612
Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414
||| || ||| ||| || | ||||||||| || || ||||||||||| |
Sbjct 10004613 ACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAA 10004672
Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474
| || ||||| || |||| || | |||| |||| ||| || || || || |
Sbjct 10004673 ACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAA 10004732
Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534
|| || | |||||| || |||||||| ||||| || | ||| |||||||||||| |
Sbjct 10004733 AGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACCGGGGCGCTTGCCGCCTC 10004792
Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594
|||| | || || || ||| || || || || | |||||||| || | || | ||
Sbjct 10004793 CCTGATCCACATAACGAGCCACATTATTAAAGACCCTCAGCATGGGAACCAACCCATTGG 10004852
Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA-GCA-GTGGAT 79652
|| || || ||| || || || | || |||||| | | ||| || ||
Sbjct 10004853 AAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATG--CAATGCACGTTGAG 10004910
Query 79653 TCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCC 79712
||||||||| |||| |||||||||| ||||| | | | | || | | |||||
Sbjct 10004911 TCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGACTTGAAAATGCC 10004970
Query 79713 CTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGT 79772
|||||| |||||| || |||| | | ||||| || ||||| ||| || ||| ||
Sbjct 10004971 CTCGATGGAGTCGGCCGTCATGGTCAGAAGGAAACACGACGACAACTGCGGCCGGTTTGT 10005030
Query 79773 ACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809
| ||| || || || |||| || || ||||||
Sbjct 10005031 GGCAGCGGCAAACAGTGTGGGCGATGCATGTGTGAAG 10005067
Score = 116 bits (128), Expect = 4e-21
Identities = 315/471 (67%), Gaps = 21/471 (4%)
Strand=Plus/Minus
Query 20357 ATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACC 20416
|| |||| ||||| | || ||||| ||||||| || |||||||| || || || ||
Sbjct 10003896 ATTAAGAAGCACGGTGTCCGGAACTCACTGCTCGTTGCTCCCATGCCCACTGCATCTACA 10003837
Query 20417 GCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGT 20476
|| ||||| ||||| ||||| || | |||||||||||||| || ||||| ||| ||
Sbjct 10003836 GCTCAGATAATGGGCAACAATGAATCCTTCGAGCCGTACACCACGAACATATACACCCGG 10003777
Query 20477 CGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGA-CTTGCAGAA 20535
|| ||| |||| || ||| |||| ||| | || || | ||||| || | |||
Sbjct 10003776 CGAGTTCTGTCCGGCGAATTCCAGGTGGTCAACCATCATTTGTTGCGCGACCTAACCGAA 10003717
Query 20536 GATCGATATGTGGTCGCCCAAAATTAAGAATGAAATTGT-CCGAGCCGGCGGGAGCG--T 20592
| || ||||| | | || ||||| | || | ||||| | |||| || |
Sbjct 10003716 -CTGGACTTGTGGGACGACGACATGAAGAACCAGATCATATCGAGCAG--GGGATCGATT 10003660
Query 20593 CCAGGCATTG-GA-TATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATC 20650
| | ||||| || || |||||||| | || | |||| ||| || |||||||||
Sbjct 10003659 CAAAACATTGAGACCATACCCCAGAAGGTGCGAGATCTGTACAAGACGGTGTGGGAAATC 10003600
Query 20651 CCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAG 20710
|| ||| || || | ||||| |||||||| || || | ||| || ||| |||
Sbjct 10003599 TCAGTCAAGTCCACGATTAAAATGGCCGCCGATCGTGGTGCGTTCATAGATCAGAGTCAG 10003540
Query 20711 TCGCTCAATGTCTTCATGGAGAATCCGAGCC------TGGCGAAGCTGAGCTCCATGCAT 20764
||| |||| | |||| | ||||||| ||| ||||||| ||||| ||
Sbjct 10003539 TCGTTCAA--CATACATGTGG---CCGAGCCAAACTATGG-AAAGCTGACTTCCATACAC 10003486
Query 20765 ATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACC 20815
| ||| |||| | || || || || || |||||||||||||| |||
Sbjct 10003485 TTTTACTCCTGGAAAGCAGGTCTTAAAACCGGAATGTACTATCTGCGCACC 10003435
Score = 93.3 bits (102), Expect = 5e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566
||| ||||||| ||| || || ||| ||||| || |||||||||||||| | ||
Sbjct 10003756 GAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTC 10003815
Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626
||||| ||||| ||||| || || || || || |||||||| || || || || || ||
Sbjct 10003816 ATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTT 10003875
Query 78627 CCGAAGACCATGCGTCTTGAT 78647
||| | ||| ||| |||| ||
Sbjct 10003876 CCGGACACCGTGCTTCTTAAT 10003896
>seq2
Length=21544594
Score = 105 bits (116), Expect = 7e-18
Identities = 346/529 (65%), Gaps = 9/529 (2%)
Strand=Plus/Minus
Query 59612 TTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCT 59671
||| |||||| ||||||||||| | || | || ||||| | || ||| || ||
Sbjct 8575844 TTCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGGCACCGCCT 8575785
Query 59672 CAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGG 59731
|| ||||||||| ||||||||| | || ||||||||||| || || ||||||
Sbjct 8575784 GAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCCTCTGATGG 8575725
Query 59732 AATTGTGATGGAAAATATAGACATGAACTTTTCCA--AGGATGTCCAGATTGCCGAGGCC 59789
|| || | || || | | || | ||| |||| || ||||| | |||||
Sbjct 8575724 CATCGTAAACGAGAACCTGGTG--GAGCGATTCAGTCAGGAGGTGCAGATCACGGAGGCA 8575667
Query 59790 CGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCT 59848
|| | ||||||| | ||| ||| || ||| | ||||| |||| |||| |
Sbjct 8575666 CGATGCTTCTACGGCTTCCAGATCGC-CATGGAGAACGTGCACTCGGAGATGTACAGTGT 8575608
Query 59849 CATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGA 59908
||||||| | | || |||||| | || | |||||| || || ||
Sbjct 8575607 TTTGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTGTTCAACGCTATCGA 8575548
Query 59909 GACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGA-GTCCTGGA- 59966
||| || || || || | || ||||| |||||| || ||||| |||| |
Sbjct 8575547 AACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTCGTCCAAGTC 8575488
Query 59967 GCATCATTT-GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGG 60025
| | |||| | | || |||| || ||||| |||||| || ||||||||| ||
Sbjct 8575487 GGCTAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGG 8575428
Query 60026 CTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTC 60085
| ||| | ||||||||||| || ||||| || || ||||| || ||| |||||
Sbjct 8575427 CAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTC 8575368
Query 60086 CAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG 60134
|||||||||||| || || ||||||||| | || || ||||| |||
Sbjct 8575367 CAACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG 8575319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548472559869360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |