Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 192 6e-44 seq2 105 7e-18 >seq1 Length=23539531 Score = 192 bits (212), Expect = 6e-44 Identities = 500/757 (66%), Gaps = 8/757 (1%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| |||||| || || |||| ||||| ||| || | |||||| |||||| Sbjct 10004315 GAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCAC 10004374 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || || |||| |||||||| | |||| ||||||||||||| ||| || |||||| Sbjct 10004375 AAGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10004434 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||| || ||||||||| | |||||||| || || || | | | | ||| | | Sbjct 10004435 TTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGG 10004494 Query 79237 TCCCGGGCCCGGACAACCTTC--TTGTACCGACCCTGTGCGACGTACGTCCGGTACAACT 79294 | ||| || | ||| ||| |||||||| | |||| || ||||| || Sbjct 10004495 GATTGAGCCTTAAC--CGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCT 10004552 Query 79295 CGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354 | ||| | || || | || ||| | || || || |||| ||| |||||||| || Sbjct 10004553 TTTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCACATGAGCG 10004612 Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 ||| || ||| ||| || | ||||||||| || || ||||||||||| | Sbjct 10004613 ACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAA 10004672 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 | || ||||| || |||| || | |||| |||| ||| || || || || | Sbjct 10004673 ACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAA 10004732 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 || || | |||||| || |||||||| ||||| || | ||| |||||||||||| | Sbjct 10004733 AGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACCGGGGCGCTTGCCGCCTC 10004792 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 |||| | || || || ||| || || || || | |||||||| || | || | || Sbjct 10004793 CCTGATCCACATAACGAGCCACATTATTAAAGACCCTCAGCATGGGAACCAACCCATTGG 10004852 Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA-GCA-GTGGAT 79652 || || || ||| || || || | || |||||| | | ||| || || Sbjct 10004853 AAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATG--CAATGCACGTTGAG 10004910 Query 79653 TCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCC 79712 ||||||||| |||| |||||||||| ||||| | | | | || | | ||||| Sbjct 10004911 TCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGACTTGAAAATGCC 10004970 Query 79713 CTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGT 79772 |||||| |||||| || |||| | | ||||| || ||||| ||| || ||| || Sbjct 10004971 CTCGATGGAGTCGGCCGTCATGGTCAGAAGGAAACACGACGACAACTGCGGCCGGTTTGT 10005030 Query 79773 ACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809 | ||| || || || |||| || || |||||| Sbjct 10005031 GGCAGCGGCAAACAGTGTGGGCGATGCATGTGTGAAG 10005067 Score = 116 bits (128), Expect = 4e-21 Identities = 315/471 (67%), Gaps = 21/471 (4%) Strand=Plus/Minus Query 20357 ATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACC 20416 || |||| ||||| | || ||||| ||||||| || |||||||| || || || || Sbjct 10003896 ATTAAGAAGCACGGTGTCCGGAACTCACTGCTCGTTGCTCCCATGCCCACTGCATCTACA 10003837 Query 20417 GCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGT 20476 || ||||| ||||| ||||| || | |||||||||||||| || ||||| ||| || Sbjct 10003836 GCTCAGATAATGGGCAACAATGAATCCTTCGAGCCGTACACCACGAACATATACACCCGG 10003777 Query 20477 CGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGA-CTTGCAGAA 20535 || ||| |||| || ||| |||| ||| | || || | ||||| || | ||| Sbjct 10003776 CGAGTTCTGTCCGGCGAATTCCAGGTGGTCAACCATCATTTGTTGCGCGACCTAACCGAA 10003717 Query 20536 GATCGATATGTGGTCGCCCAAAATTAAGAATGAAATTGT-CCGAGCCGGCGGGAGCG--T 20592 | || ||||| | | || ||||| | || | ||||| | |||| || | Sbjct 10003716 -CTGGACTTGTGGGACGACGACATGAAGAACCAGATCATATCGAGCAG--GGGATCGATT 10003660 Query 20593 CCAGGCATTG-GA-TATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATC 20650 | | ||||| || || |||||||| | || | |||| ||| || ||||||||| Sbjct 10003659 CAAAACATTGAGACCATACCCCAGAAGGTGCGAGATCTGTACAAGACGGTGTGGGAAATC 10003600 Query 20651 CCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAG 20710 || ||| || || | ||||| |||||||| || || | ||| || ||| ||| Sbjct 10003599 TCAGTCAAGTCCACGATTAAAATGGCCGCCGATCGTGGTGCGTTCATAGATCAGAGTCAG 10003540 Query 20711 TCGCTCAATGTCTTCATGGAGAATCCGAGCC------TGGCGAAGCTGAGCTCCATGCAT 20764 ||| |||| | |||| | ||||||| ||| ||||||| ||||| || Sbjct 10003539 TCGTTCAA--CATACATGTGG---CCGAGCCAAACTATGG-AAAGCTGACTTCCATACAC 10003486 Query 20765 ATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACC 20815 | ||| |||| | || || || || || |||||||||||||| ||| Sbjct 10003485 TTTTACTCCTGGAAAGCAGGTCTTAAAACCGGAATGTACTATCTGCGCACC 10003435 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 ||| ||||||| ||| || || ||| ||||| || |||||||||||||| | || Sbjct 10003756 GAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTC 10003815 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 ||||| ||||| ||||| || || || || || |||||||| || || || || || || Sbjct 10003816 ATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTT 10003875 Query 78627 CCGAAGACCATGCGTCTTGAT 78647 ||| | ||| ||| |||| || Sbjct 10003876 CCGGACACCGTGCTTCTTAAT 10003896 >seq2 Length=21544594 Score = 105 bits (116), Expect = 7e-18 Identities = 346/529 (65%), Gaps = 9/529 (2%) Strand=Plus/Minus Query 59612 TTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCT 59671 ||| |||||| ||||||||||| | || | || ||||| | || ||| || || Sbjct 8575844 TTCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGGCACCGCCT 8575785 Query 59672 CAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGG 59731 || ||||||||| ||||||||| | || ||||||||||| || || |||||| Sbjct 8575784 GAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCCTCTGATGG 8575725 Query 59732 AATTGTGATGGAAAATATAGACATGAACTTTTCCA--AGGATGTCCAGATTGCCGAGGCC 59789 || || | || || | | || | ||| |||| || ||||| | ||||| Sbjct 8575724 CATCGTAAACGAGAACCTGGTG--GAGCGATTCAGTCAGGAGGTGCAGATCACGGAGGCA 8575667 Query 59790 CGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCT 59848 || | ||||||| | ||| ||| || ||| | ||||| |||| |||| | Sbjct 8575666 CGATGCTTCTACGGCTTCCAGATCGC-CATGGAGAACGTGCACTCGGAGATGTACAGTGT 8575608 Query 59849 CATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGA 59908 ||||||| | | || |||||| | || | |||||| || || || Sbjct 8575607 TTTGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTGTTCAACGCTATCGA 8575548 Query 59909 GACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGA-GTCCTGGA- 59966 ||| || || || || | || ||||| |||||| || ||||| |||| | Sbjct 8575547 AACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTCGTCCAAGTC 8575488 Query 59967 GCATCATTT-GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGG 60025 | | |||| | | || |||| || ||||| |||||| || ||||||||| || Sbjct 8575487 GGCTAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGG 8575428 Query 60026 CTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTC 60085 | ||| | ||||||||||| || ||||| || || ||||| || ||| ||||| Sbjct 8575427 CAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTC 8575368 Query 60086 CAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG 60134 |||||||||||| || || ||||||||| | || || ||||| ||| Sbjct 8575367 CAACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG 8575319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548472559869360