Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 159 4e-34 seq2 129 6e-25 >seq1 Length=23539531 Score = 159 bits (176), Expect = 4e-34 Identities = 305/446 (68%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || ||||||||||| || ||||| |||| | |||||| | || || || Sbjct 18945436 ATCCAGTTCCGATGCCCTCGGCTCCGTTTACCAATACCATCGGTATGATGGGAAGATACC 18945495 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 || ||||| | || ||| || || |||| | ||| | ||||| | || ||| | Sbjct 18945496 ACAGTGGCTCGATCTTTTGGCCATCGTCCACCTGGTAATCCAAAAGTGGATCGTCCAATG 18945555 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 ||| | |||| |||| |||| ||| || ||||| ||||| || | |||||| Sbjct 18945556 GATGGTATATGAGTCGCGTCAAGGGAGACATTAAAGTGAAAATGTAACGAGCGCTGGCAC 18945615 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 ||| ||||| || | || || || ||||| || || ||||| || || || | || Sbjct 18945616 AATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTTATGT 18945675 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 |||| || ||||| |||||||| |||| ||| || || || |||||| | || | Sbjct 18945676 TGTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGCAGGGATACCTCTC 18945735 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-C 152232 ||||||| || |||| | |||||| | |||| | | ||| |||||||||| || | Sbjct 18945736 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 18945795 Query 152233 G-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291 | | |||| ||| | |||| ||| | | | || ||||| ||||| || ||||| || Sbjct 18945796 GCTTGTCA--TTCCTTTTGAAACAAGTGAACATAACCTTCCGCTGACCCGGCTTCAAGCC 18945853 Query 152292 GTCCACCACGTGAGGAATCGAACGCT 152317 ||||||| |||||| || |||| Sbjct 18945854 ATCCACCAGACTAGGAATGGAGCGCT 18945879 Score = 129 bits (142), Expect = 6e-25 Identities = 207/293 (71%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAG-CAAGACGCGTACCGAATT 117362 ||||||||||||||||| ||| ||| ||| ||||| || | |||| || ||||| |||| Sbjct 18945590 AGTGAAAATGTAACGAGCGCTGGCACAATCTTTGCCTCCCGTCAAG-CGGGTACCAAATT 18945648 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | || | ||||| | || || | |||||| || |||||||| || || |||| || | Sbjct 18945649 GACCGCGTGGCTCAAGCAGATTTATGTTGTTCGCACCCACAAAATTCTGGGCCAGATTTA 18945708 Query 117423 CAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 | || || || ||| |||| || ||||| || |||| | ||||||||| | | Sbjct 18945709 CGATTGTCATCTGCAGGGATACCTCTCCGTGGTGGTAGGCCGACATCTCCGCCACTGATC 18945768 Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTTGAGGCAGGCATAAAT 117540 | | ||||| |||||||||| || | |||| ||| | |||| || | | || Sbjct 18945769 CGGATAGCTGGGCCACCTTCACCTCACGCTTGTCA--TTCCTTTTGAAACAAGTGAACAT 18945826 Query 117541 CACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCT 117593 ||||| ||||||| ||||||| |||||| ||| ||| || || |||| Sbjct 18945827 AACCTTCCGCTGACCCGGCTTCAAGCCATCCACCAGACTAGGAATGGAGCGCT 18945879 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||| |||||||| || || ||||| || || || || |||||||| ||||||||| Sbjct 10003878 CGGAACTCACTGCTCGTTGCTCCCATGCCCACTGCATCTACAGCTCAGATAATGGGCAAC 10003819 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 || || | |||||||||||||| || ||||| ||| Sbjct 10003818 AATGAATCCTTCGAGCCGTACACCACGAACATATAC 10003783 >seq2 Length=21544594 Score = 129 bits (142), Expect = 6e-25 Identities = 525/809 (65%), Gaps = 35/809 (4%) Strand=Plus/Plus Query 74477 CTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAAGGGTT 74536 |||||| |||||||||||||| || |||| ||| || ||||||| ||| || ||||| Sbjct 8575049 CTTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAATGGGTT 8575108 Query 74537 CTTTGCACCGTAAATAGGCTTCTCC----CCAAACTGTGCCATGAGG---CGATCCGCCA 74589 || | ||| || ||| ||| || |||| ||| ||| || ||||| | Sbjct 8575109 TTTGGTGTTGTAGAT---CTT-TCCAACGCCCAACT---CCACGAGCAAACGGTCCGCTA 8575161 Query 74590 CAAATTGAATGTACTGCGTCATTTCTCCCGCA-TCCATGCCGATGAGTTTGCACGGCAGT 74648 | || | ||||||||| | ||| | ||| | ||||||||| | ||| ||||| Sbjct 8575162 CGAACTCAATGTACTGGGACATCAGGTC-GCAGTTCATGCCGATCAAATTGACGGGCAGG 8575220 Query 74649 GCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCTTGTGAATGT 74706 || ||||||| ||||| ||| | | || | | | | | || |||| | ||| Sbjct 8575221 GCATCGGTGAGGAACTCCTGCTCAA--TGGCCACCGCGTCGCGGATGATCTCGATGATGC 8575278 Query 74707 CTTTG-GAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAACTCCTGATGC 74765 | | | || | | | | |||||| | | | | ||||||||| || ||| Sbjct 8575279 GCTCGCGCTTGGGTCGCTGCAC-CAGGTGCTGGAACATCAGCACGGCAAAGTCGCAGTGC 8575337 Query 74766 GAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGC 74825 |||| || || | |||| || || || || | | |||||||| || || ||| Sbjct 8575338 AAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGC 8575397 Query 74826 TTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCA 74885 ||||| | ||| || |||| |||| || |||||||||||||| || || ||| Sbjct 8575398 TTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGCA 8575457 Query 74886 AAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCATCCAAGTCTGAGCCCAT 74942 ||||||| | ||| | | |||| | | | ||| | ||||| | | | ||||| Sbjct 8575458 AAGGCGATGATGCGCTCCCCGAAATTAGCCGACTTGGACGAGATCCAGGACAGGGCCCAG 8575517 Query 74943 TCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCT 75002 || || || || || || || || | || ||||| || | ||| ||| | | || || Sbjct 8575518 TCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGG--TACTCTCGCT 8575575 Query 75003 --TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACT 75060 | |||||| || | |||| |||| || |||| ||||||| || | || Sbjct 8575576 GGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCT 8575635 Query 75061 CGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCT--TTG 75117 | || ||| |||| | ||||||| | || ||||| | ||||| || |||| || Sbjct 8575636 CCATG-GCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTG 8575694 Query 75118 AAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTA 75177 || || | | ||||| | |||||||| || |||||||| || || ||||| | Sbjct 8575695 AATCGCTC--CACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCAAAGAAGGCCAGCA 8575752 Query 75178 CCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCG 75237 | ||| || |||||||| ||||| | || || ||| || | |||||| | Sbjct 8575753 CGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAGGTCCTTGG 8575812 Query 75238 CCAAATCAATCTCCTCGACCGTCCAGAAA 75266 |||||| | ||||||||| ||||||||| Sbjct 8575813 ACAAATCCACCTCCTCGACGGTCCAGAAA 8575841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547163884516200