Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1 159 4e-34
seq2 129 6e-25
>seq1
Length=23539531
Score = 159 bits (176), Expect = 4e-34
Identities = 305/446 (68%), Gaps = 4/446 (1%)
Strand=Plus/Plus
Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933
|||| || ||||||||||| || ||||| |||| | |||||| | || || ||
Sbjct 18945436 ATCCAGTTCCGATGCCCTCGGCTCCGTTTACCAATACCATCGGTATGATGGGAAGATACC 18945495
Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993
|| ||||| | || ||| || || |||| | ||| | ||||| | || ||| |
Sbjct 18945496 ACAGTGGCTCGATCTTTTGGCCATCGTCCACCTGGTAATCCAAAAGTGGATCGTCCAATG 18945555
Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053
||| | |||| |||| |||| ||| || ||||| ||||| || | ||||||
Sbjct 18945556 GATGGTATATGAGTCGCGTCAAGGGAGACATTAAAGTGAAAATGTAACGAGCGCTGGCAC 18945615
Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113
||| ||||| || | || || || ||||| || || ||||| || || || | ||
Sbjct 18945616 AATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTTATGT 18945675
Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173
|||| || ||||| |||||||| |||| ||| || || || |||||| | || |
Sbjct 18945676 TGTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGCAGGGATACCTCTC 18945735
Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-C 152232
||||||| || |||| | |||||| | |||| | | ||| |||||||||| || |
Sbjct 18945736 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 18945795
Query 152233 G-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291
| | |||| ||| | |||| ||| | | | || ||||| ||||| || ||||| ||
Sbjct 18945796 GCTTGTCA--TTCCTTTTGAAACAAGTGAACATAACCTTCCGCTGACCCGGCTTCAAGCC 18945853
Query 152292 GTCCACCACGTGAGGAATCGAACGCT 152317
||||||| |||||| || ||||
Sbjct 18945854 ATCCACCAGACTAGGAATGGAGCGCT 18945879
Score = 129 bits (142), Expect = 6e-25
Identities = 207/293 (71%), Gaps = 6/293 (2%)
Strand=Plus/Plus
Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAG-CAAGACGCGTACCGAATT 117362
||||||||||||||||| ||| ||| ||| ||||| || | |||| || ||||| ||||
Sbjct 18945590 AGTGAAAATGTAACGAGCGCTGGCACAATCTTTGCCTCCCGTCAAG-CGGGTACCAAATT 18945648
Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422
| || | ||||| | || || | |||||| || |||||||| || || |||| || |
Sbjct 18945649 GACCGCGTGGCTCAAGCAGATTTATGTTGTTCGCACCCACAAAATTCTGGGCCAGATTTA 18945708
Query 117423 CAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482
| || || || ||| |||| || ||||| || |||| | ||||||||| | |
Sbjct 18945709 CGATTGTCATCTGCAGGGATACCTCTCCGTGGTGGTAGGCCGACATCTCCGCCACTGATC 18945768
Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTTGAGGCAGGCATAAAT 117540
| | ||||| |||||||||| || | |||| ||| | |||| || | | ||
Sbjct 18945769 CGGATAGCTGGGCCACCTTCACCTCACGCTTGTCA--TTCCTTTTGAAACAAGTGAACAT 18945826
Query 117541 CACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCT 117593
||||| ||||||| ||||||| |||||| ||| ||| || || ||||
Sbjct 18945827 AACCTTCCGCTGACCCGGCTTCAAGCCATCCACCAGACTAGGAATGGAGCGCT 18945879
Score = 93.3 bits (102), Expect = 5e-14
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|| ||||| |||||||| || || ||||| || || || || |||||||| |||||||||
Sbjct 10003878 CGGAACTCACTGCTCGTTGCTCCCATGCCCACTGCATCTACAGCTCAGATAATGGGCAAC 10003819
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579
|| || | |||||||||||||| || ||||| |||
Sbjct 10003818 AATGAATCCTTCGAGCCGTACACCACGAACATATAC 10003783
>seq2
Length=21544594
Score = 129 bits (142), Expect = 6e-25
Identities = 525/809 (65%), Gaps = 35/809 (4%)
Strand=Plus/Plus
Query 74477 CTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAAGGGTT 74536
|||||| |||||||||||||| || |||| ||| || ||||||| ||| || |||||
Sbjct 8575049 CTTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAATGGGTT 8575108
Query 74537 CTTTGCACCGTAAATAGGCTTCTCC----CCAAACTGTGCCATGAGG---CGATCCGCCA 74589
|| | ||| || ||| ||| || |||| ||| ||| || ||||| |
Sbjct 8575109 TTTGGTGTTGTAGAT---CTT-TCCAACGCCCAACT---CCACGAGCAAACGGTCCGCTA 8575161
Query 74590 CAAATTGAATGTACTGCGTCATTTCTCCCGCA-TCCATGCCGATGAGTTTGCACGGCAGT 74648
| || | ||||||||| | ||| | ||| | ||||||||| | ||| |||||
Sbjct 8575162 CGAACTCAATGTACTGGGACATCAGGTC-GCAGTTCATGCCGATCAAATTGACGGGCAGG 8575220
Query 74649 GCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCTTGTGAATGT 74706
|| ||||||| ||||| ||| | | || | | | | | || |||| | |||
Sbjct 8575221 GCATCGGTGAGGAACTCCTGCTCAA--TGGCCACCGCGTCGCGGATGATCTCGATGATGC 8575278
Query 74707 CTTTG-GAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAACTCCTGATGC 74765
| | | || | | | | |||||| | | | | ||||||||| || |||
Sbjct 8575279 GCTCGCGCTTGGGTCGCTGCAC-CAGGTGCTGGAACATCAGCACGGCAAAGTCGCAGTGC 8575337
Query 74766 GAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGC 74825
|||| || || | |||| || || || || | | |||||||| || || |||
Sbjct 8575338 AAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGC 8575397
Query 74826 TTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCA 74885
||||| | ||| || |||| |||| || |||||||||||||| || || |||
Sbjct 8575398 TTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGCA 8575457
Query 74886 AAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCATCCAAGTCTGAGCCCAT 74942
||||||| | ||| | | |||| | | | ||| | ||||| | | | |||||
Sbjct 8575458 AAGGCGATGATGCGCTCCCCGAAATTAGCCGACTTGGACGAGATCCAGGACAGGGCCCAG 8575517
Query 74943 TCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCT 75002
|| || || || || || || || | || ||||| || | ||| ||| | | || ||
Sbjct 8575518 TCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGG--TACTCTCGCT 8575575
Query 75003 --TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACT 75060
| |||||| || | |||| |||| || |||| ||||||| || | ||
Sbjct 8575576 GGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCT 8575635
Query 75061 CGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCT--TTG 75117
| || ||| |||| | ||||||| | || ||||| | ||||| || |||| ||
Sbjct 8575636 CCATG-GCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTG 8575694
Query 75118 AAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTA 75177
|| || | | ||||| | |||||||| || |||||||| || || ||||| |
Sbjct 8575695 AATCGCTC--CACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCAAAGAAGGCCAGCA 8575752
Query 75178 CCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCG 75237
| ||| || |||||||| ||||| | || || ||| || | |||||| |
Sbjct 8575753 CGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAGGTCCTTGG 8575812
Query 75238 CCAAATCAATCTCCTCGACCGTCCAGAAA 75266
|||||| | ||||||||| |||||||||
Sbjct 8575813 ACAAATCCACCTCCTCGACGGTCCAGAAA 8575841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547163884516200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |