Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9 167 3e-36 seq1 161 1e-34 seq4 159 4e-34 seq671 154 2e-32 seq3570 136 5e-27 seq2 86.0 7e-12 >seq9 Length=20829647 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || ||||||||||| || || | ||||| ||| || Sbjct 5792695 ATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCATCC 5792636 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| || || ||||||||||||||||| || ||||| ||| Sbjct 5792635 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 5792576 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| || || ||||| || ||||| | || || || | ||||| || Sbjct 5792575 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 5792516 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| | ||| ||||||| || ||||| Sbjct 5792515 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGTGGTGG 5792469 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || ||| | ||||||||| || Sbjct 5792467 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCC 5792408 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||||| || || ||||||||||||||||| || ||||| ||| Sbjct 5792407 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 5792348 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || ||||| || ||||| | || || || | ||||| || Sbjct 5792347 CAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 5792288 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| | ||| ||||||| |||||||| Sbjct 5792287 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGCGGTGG 5792241 >seq1 Length=23539531 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || ||||||||||| || | Sbjct 10088716 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 10088775 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || || || ||||||||||| || |||||||||||||| ||| Sbjct 10088776 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 10088835 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || |||| || ||||| | |||||||| Sbjct 10088836 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 10088895 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| |||||||| || | || | || || || ||||| Sbjct 10088896 ATTCAGAAGGAGTCCACTCTGCACTTGGTGCTCCGCCTGCGTGGTGG 10088942 Score = 143 bits (158), Expect = 3e-29 Identities = 303/448 (68%), Gaps = 12/448 (3%) Strand=Plus/Minus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| |||||||| ||| ||| ||| | ||||| ||||| ||||| || | | Sbjct 18945879 AGCGCTCCATTCCTAGTCTGGTGGATGGCTTGAAGCCGGGTCAGCGGAAGGTTATGTTCA 18945820 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAG--TGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 | || |||| | ||| || | || ||| |||||||||| ||||| || || | || Sbjct 18945819 CTTGTTTCAAAAGGAA--TGACAAGCGTGAGGTGAAGGTGGCCCAGCTATCCGGATCAGT 18945762 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 ||| ||| ||||||| |||||||| |||| || || ||| || || || || || Sbjct 18945761 GGCGGAGATGTCGGCCTACCACCACGGAGAGGTATCCCTGCAGATGACAATCGTAAATCT 18945702 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 || ||||| ||||| ||||| || ||| | || | || |||||| || || ||||| Sbjct 18945701 GGCCCAGAATTTTGTGGGTGCGAACAACATAAATCTGCTTGAGCCACGCGGTCAATTTGG 18945642 Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCC----GTC 32254 ||||| | | || ||||| ||| ||| ||| | |||||||| ||||| ||| Sbjct 18945641 TACCCGCTTGACGGGAGGCAAAGATTGTGCCAGCGCTCGTTACATTTTCACTTTAATGTC 18945582 Query 32255 TCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATT 32314 || |||| |||||| || | | | || | ||||||| | | | | ||| | Sbjct 18945581 TC---CCTT-GACGCGACTCATATACCATCCATTGGACGATCCACTTTTGGATTACCAGG 18945526 Query 32315 TTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGG 32374 | || || || || | ||||||| ||| || ||| | | |||||| | |||| Sbjct 18945525 TGGACGATGGCCAAAAGATCGAGCCACTGTGGTATCTTCCCATCATACCGATGGTATTGG 18945466 Query 32375 TGAACGGTGCAGAAGGCATCGGAACGGG 32402 | ||||| || || ||||||||||| || Sbjct 18945465 TAAACGGAGCCGAGGGCATCGGAACTGG 18945438 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || ||||||||||| || || | ||||| ||| | | Sbjct 4074916 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 4074975 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | |||||||| || ||||| |||||||| ||||| ||||| ||| Sbjct 4074976 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAG 4075035 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| || || || | ||||| || Sbjct 4075036 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 4075095 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | || || || ||||| Sbjct 4075096 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGG 4075142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 ||| |||| ||||| || || | ||| || | | | | || |||||||||||||| Sbjct 10004314 GGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCA 10004373 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 ||| || ||||||| || || | || | |||||| ||| |||||||||||| Sbjct 10004374 CAAGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTC 10004433 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGC 81077 |||| || ||||||||| | |||||||| || || | || | |||||| Sbjct 10004434 CTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGC 10004484 >seq4 Length=24153973 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || ||| | ||||||||| || Sbjct 3789827 ATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3789768 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || |||||||| ||||||||||| || ||||| ||| Sbjct 3789767 GACACCATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAG 3789708 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || |||||||| || || | || ||||| | || || || Sbjct 3789707 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 3789648 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || ||||| | || | ||||| || || ||| Sbjct 3789647 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTCCGTGGAGGA 3789600 Score = 125 bits (138), Expect = 8e-24 Identities = 172/244 (70%), Gaps = 16/244 (7%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| | ||||| ||||| || || || ||||| ||| | Sbjct 3790072 AATGCAGATCTTTGTGAAGACCTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCGTC 3790013 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | |||||||| |||||||| |||||||||||||| ||||| || Sbjct 3790012 TGACACCATTGAGAATGTTAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCA 3789953 Query 27525 GCAGCGTCTAATTTTTG----------------CTGGTAAGCAACTCGAGGATGATCGTA 27568 ||||||||| || || | | || |||||||| || || | || | Sbjct 3789952 GCAGCGTCTGATCTTCGCCGGAAGCCTCATCCACCGGCAAGCAACTGGAAGACGGACGCA 3789893 Query 27569 CCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCG 27628 |||| | || || || |||| ||||| || || ||||| | || | ||||| || | Sbjct 3789892 CCCTGTCCGATTACAACATCCAGAAGGAGTCAACCCTTCACTTGGTTCTCCGTCTGCGAG 3789833 Query 27629 GTGG 27632 | || Sbjct 3789832 GAGG 3789829 >seq671 Length=216 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || || || |||||| || || | ||||| ||| |||||||| Sbjct 214 ACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCAGACACCATTGAGAATGTGAAGGCT 155 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || ||||||||||||||||||||||| ||||||||||| || || || || ||| Sbjct 154 AAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 95 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| || || || | ||||| || |||| ||||| || || ||||| Sbjct 94 CAGCTCGAGGATGGACGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTTCAC 35 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | ||||| || ||||| Sbjct 34 TTGGTTCTCCGTCTGCGTGGTGG 12 >seq3570 Length=216 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || | ||||| ||| || Sbjct 7 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCATCC 66 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||||| || || ||||||||||||||||| || ||||| ||| Sbjct 67 GATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 126 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || ||||| || ||||| | || || || | ||||| || Sbjct 127 CAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 186 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||| || || ||||| Sbjct 187 ATCCAGAAGGAGTCGACCCTTCA 209 >seq2 Length=21544594 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCA--TTCTGTTCTATTTTCTGGC 64783 || |||||| ||||| || || ||||| | | | || ||| || |||||||||| Sbjct 8575462 GCCTTTGCCGCCGTGGAGGGCATCTTCTT--CAGCGGCAGCTTCGCCTCCATTTTCTGGC 8575405 Query 64784 TAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACG 64843 | || ||||| || |||||||| || || | || || ||||||||||||||||| |||| Sbjct 8575404 TTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTCCAACGAGCTGATCTCTCGCGACG 8575345 Query 64844 AGGGGCTCCACCAAGAATTTGCGGT 64868 |||| | ||| || ||||| || Sbjct 8575344 AGGGCTTGCACTGCGACTTTGCCGT 8575320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570256085063280