Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1 255 5e-63 >seq1 Length=23539531 Score = 255 bits (282), Expect = 5e-63 Identities = 439/635 (69%), Gaps = 8/635 (1%) Strand=Plus/Plus Query 29832 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTAT 29891 |||| |||||||||||| || | ||| || || ||||||||| || |||| | Sbjct 2846035 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGT 2846094 Query 29892 CCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29951 ||||||||||| | || |||| | |||| ||||| || ||||| | || || || | Sbjct 2846095 TGAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 2846154 Query 29952 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 30011 | || || ||||||| ||||| || | |||| ||||||||| |||||||| || || | Sbjct 2846155 CATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGTACGCCCAGGC 2846214 Query 30012 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG------TCGCTCACGT 30065 ||||||| | |||||||||||||| ||||| ||||| ||| ||| |||| Sbjct 2846215 CCATGTCGGCGCTTCTCTGGTAGAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACGT 2846274 Query 30066 AAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCC 30125 ||||||| || | ||||||||| || || ||||| | ||| || |||| Sbjct 2846275 AAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCC 2846334 Query 30126 AGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTT 30185 | || ||| ||||||||| | |||| ||||| ||||||||| ||| | | | Sbjct 2846335 AAGCCGACATGATGATGCGTCGGTCTGAGGGGTTATTCCTGATGGTGTCGATCACCTGGC 2846394 Query 30186 GCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCG 30244 ||||||| || | ||| | || |||||| | | || || | ||||| || ||| Sbjct 2846395 GCAGCTGGTCGATTCCCTTGCCGCTGTAGTCATCGTCGCAGGTGC-CGTACTGCGCCCCG 2846453 Query 30245 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30304 ||||||||||||||||| ||||||||||| ||||| || || | | | | | ||| Sbjct 2846454 AAATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGGCTCGGCCCGTGAAC 2846513 Query 30305 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCA 30364 ||| ||||||||| || |||||||| | ||| | |||||||| | || |||| | Sbjct 2846514 CCCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCC 2846573 Query 30365 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30424 ||| |||| | || || |||||||||||||||||||| | || || Sbjct 2846574 TGCAGCAGCTTGGCATCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACCGCG 2846633 Query 30425 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 | ||||| | ||| || || || |||||||| Sbjct 2846634 CGGAAGAAGACACGCTTCGTGGTCAGCAGGGGAAA 2846668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406272671412948