Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq1 255 5e-63
>seq1
Length=23539531
Score = 255 bits (282), Expect = 5e-63
Identities = 439/635 (69%), Gaps = 8/635 (1%)
Strand=Plus/Plus
Query 29832 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTAT 29891
|||| |||||||||||| || | ||| || || ||||||||| || |||| |
Sbjct 2846035 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGT 2846094
Query 29892 CCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29951
||||||||||| | || |||| | |||| ||||| || ||||| | || || || |
Sbjct 2846095 TGAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 2846154
Query 29952 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 30011
| || || ||||||| ||||| || | |||| ||||||||| |||||||| || || |
Sbjct 2846155 CATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGTACGCCCAGGC 2846214
Query 30012 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG------TCGCTCACGT 30065
||||||| | |||||||||||||| ||||| ||||| ||| ||| ||||
Sbjct 2846215 CCATGTCGGCGCTTCTCTGGTAGAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACGT 2846274
Query 30066 AAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCC 30125
||||||| || | ||||||||| || || ||||| | ||| || ||||
Sbjct 2846275 AAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCC 2846334
Query 30126 AGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTT 30185
| || ||| ||||||||| | |||| ||||| ||||||||| ||| | | |
Sbjct 2846335 AAGCCGACATGATGATGCGTCGGTCTGAGGGGTTATTCCTGATGGTGTCGATCACCTGGC 2846394
Query 30186 GCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCG 30244
||||||| || | ||| | || |||||| | | || || | ||||| || |||
Sbjct 2846395 GCAGCTGGTCGATTCCCTTGCCGCTGTAGTCATCGTCGCAGGTGC-CGTACTGCGCCCCG 2846453
Query 30245 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30304
||||||||||||||||| ||||||||||| ||||| || || | | | | | |||
Sbjct 2846454 AAATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGGCTCGGCCCGTGAAC 2846513
Query 30305 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCA 30364
||| ||||||||| || |||||||| | ||| | |||||||| | || |||| |
Sbjct 2846514 CCCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCC 2846573
Query 30365 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30424
||| |||| | || || |||||||||||||||||||| | || ||
Sbjct 2846574 TGCAGCAGCTTGGCATCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACCGCG 2846633
Query 30425 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459
| ||||| | ||| || || || ||||||||
Sbjct 2846634 CGGAAGAAGACACGCTTCGTGGTCAGCAGGGGAAA 2846668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406272671412948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |