Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq9 89.7 3e-13
seq3570 86.0 4e-12
seq671 84.2 1e-11
>seq9
Length=20829647
Score = 89.7 bits (98), Expect = 3e-13
Identities = 155/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||| || || || |||||| || ||||| || || || || || ||
Sbjct 5792478 AGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 5792537
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || ||||| || || |||||||| || || || || | |||||||
Sbjct 5792538 CCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 5792597
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || || | ||| || || ||| || |||| |||
Sbjct 5792598 TTGTCCTGGATC-TTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGT 5792656
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || || ||||| | || || || ||||| ||||| |||
Sbjct 5792657 GATGGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATATTG 5792699
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||| || || || |||||| || ||||| || || || || || ||
Sbjct 5792250 AGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 5792309
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || ||||| || || |||||||| || || || || | |||||||
Sbjct 5792310 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 5792369
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 5792370 TTGTCCTGGATCTT 5792383
>seq3570
Length=216
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| || || || |||||| || ||||| || || || || || || |||| ||
Sbjct 215 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 156
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
|| || || ||||| || || |||||||| || || || || | |||||||||||| |
Sbjct 155 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 96
Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
||| || | || ||| | ||| || || ||| || |||| ||| || || ||
Sbjct 95 ATC-TTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTT 37
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || | || ||||| || |||||||||
Sbjct 36 GCCAGTCAGAGTCTTCACGAAGATCTGCATG 6
>seq671
Length=216
Score = 84.2 bits (92), Expect = 1e-11
Identities = 137/195 (70%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || || || |||||| || ||||| || || ||||| || ||
Sbjct 21 AGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGT 80
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || | |||||| || || || || | |||||||
Sbjct 81 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCC 140
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || || | ||| |||||| ||| ||||||| |||
Sbjct 141 TTGTCTTGGATC-TTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGT 199
Query 34668 TATCGTTTTACCGGT 34682
|| || || |||||
Sbjct 200 GATGGTCTTTCCGGT 214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314700375291227
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |