Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9 147 2e-30 seq4 136 3e-27 seq1 134 1e-26 seq3570 127 2e-24 seq2 120 3e-22 seq671 118 9e-22 >seq9 Length=20829647 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || |||||||| |||||| | || ||| | || || || || || Sbjct 5792468 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCATC 5792409 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || ||||| || || || || || ||||| Sbjct 5792408 CGATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 5792349 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | |||||| || || |||| ||| | || | ||||| ||||| Sbjct 5792348 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAA 5792289 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || ||||| ||||| |||| |||||||| Sbjct 5792288 CATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGCGGTGGCAT 5792238 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||||||||||||| | || || | || || || || ||| Sbjct 5792695 ATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCATCC 5792636 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || || || ||||| || || || || || ||||| Sbjct 5792635 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 5792576 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || |||| ||| | || | ||||| |||||| Sbjct 5792575 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 5792516 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| ||||| |||| |||||||| Sbjct 5792515 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGCAT 5792466 >seq4 Length=24153973 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| | || ||| | || || || || || Sbjct 3789827 ATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3789768 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || ||||| || || || || || || || ||||| Sbjct 3789767 GACACCATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAG 3789708 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| ||| |||||||| | ||| | |||||||||||| Sbjct 3789707 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 3789648 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| | ||| | || || || || Sbjct 3789647 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTCCGTGGAGGAAT 3789598 >seq1 Length=23539531 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || |||||||| Sbjct 10088716 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 10088775 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| ||||||||||| || || || ||||| Sbjct 10088776 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 10088835 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || ||||||| | ||| | || || || ||| Sbjct 10088836 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 10088895 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || | || ||||| | || |||| ||||| Sbjct 10088896 ATTCAGAAGGAGTCCACTCTGCACTTGGTGCTCCGCCTGCGTGGTGG 10088942 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||||||| | || || | || ||||| || || Sbjct 4074916 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 4074975 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || || || || ||||| || || ||||| Sbjct 4074976 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAG 4075035 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || | ||||| |||||| Sbjct 4075036 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 4075095 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | || |||| ||||| || Sbjct 4075096 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGTAT 4075145 >seq3570 Length=216 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || |||||||| |||||| | || || | || || || || || Sbjct 6 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCATC 65 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| ||||| || || || ||||| || || || || || ||||| Sbjct 66 CGATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 125 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | |||||| || || |||| ||| | || | ||||| ||||| Sbjct 126 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAA 185 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||| || |||||||||||| | || ||||| Sbjct 186 CATCCAGAAGGAGTCGACCCTTCACTTGGT 215 >seq2 Length=21544594 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533 |||||||| |||| |||| |||||| ||| || || ||||||||||| ||| |||||| Sbjct 4549514 TGTGGAACTCGGCGCAACTGCAGCTCGTGCGCGAGGGAAAAATGCACGGCTTTTTGCGCA 4549573 Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACG 135593 |||| ||||| |||||||| |||||||| |||| | || | | ||||| | | ||| Sbjct 4549574 TGTACTGGGCCAAAAAGATTCTGGAATGGACTGCGACACCGGAACAGGCGTTGGAGTACG 4549633 Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTT 135653 | || | | || || | |||||| | ||||||||||| | || ||||| || || | Sbjct 4549634 CGATCCTGCTGAACGACAAGTACAGTCTGGATGGACGCGACCCCAACGGCTATGTCGGCT 4549693 Query 135654 G 135654 | Sbjct 4549694 G 4549694 >seq671 Length=216 Score = 118 bits (130), Expect = 9e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||| ||| | || || || ||||| || || || ||| | ||||||| || || Sbjct 216 TGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCAGACACCATTGAGAATGTGAAGG 157 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || |||||||| || || || || || ||||| |||||| | || | |||||||| Sbjct 156 CTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCA 97 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | || | || || | || |||| || |||||||| || |||||||||||| | | Sbjct 96 AGCAGCTCGAGGATGGACGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTTC 37 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | |||||| | ||| |||| ||||| || Sbjct 36 ACTTGGTTCTCCGTCTGCGTGGTGGTAT 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434876979458880