Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq9 147 2e-30
seq4 136 3e-27
seq1 134 1e-26
seq3570 127 2e-24
seq2 120 3e-22
seq671 118 9e-22
>seq9
Length=20829647
Score = 147 bits (162), Expect = 2e-30
Identities = 171/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || |||||||| |||||| | || ||| | || || || || ||
Sbjct 5792468 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCATC 5792409
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || |||| ||||| || || || ||||| || || || || || |||||
Sbjct 5792408 CGATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 5792349
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||||| || | |||||| || || |||| ||| | || | ||||| |||||
Sbjct 5792348 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAA 5792289
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||||||| | || ||||| ||||| |||| ||||||||
Sbjct 5792288 CATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGCGGTGGCAT 5792238
Score = 145 bits (160), Expect = 7e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || ||||||||||||||| | || || | || || || || |||
Sbjct 5792695 ATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCATCC 5792636
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||||| ||||| || || || ||||| || || || || || |||||
Sbjct 5792635 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 5792576
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | |||||| || || |||| ||| | || | ||||| ||||||
Sbjct 5792575 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 5792516
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||||||| | || ||||| ||||| |||| ||||||||
Sbjct 5792515 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGCAT 5792466
>seq4
Length=24153973
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || ||||| || |||||| | || ||| | || || || || ||
Sbjct 3789827 ATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3789768
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| || || || ||||| || || || || || || || |||||
Sbjct 3789767 GACACCATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAG 3789708
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||||||||| ||| |||||||| | ||| | ||||||||||||
Sbjct 3789707 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 3789648
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| ||| | || ||||| | ||| | || || || ||
Sbjct 3789647 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTCCGTGGAGGAAT 3789598
>seq1
Length=23539531
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || |||||| | || |||||||| || ||||||||
Sbjct 10088716 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 10088775
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | |||||| || ||||| ||||||||||| || || || |||||
Sbjct 10088776 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 10088835
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||| ||||| || ||||||| | ||| | || || || |||
Sbjct 10088836 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 10088895
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| |||||||| || | || ||||| | || |||| |||||
Sbjct 10088896 ATTCAGAAGGAGTCCACTCTGCACTTGGTGCTCCGCCTGCGTGGTGG 10088942
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| || ||||||||| | || || | || ||||| || ||
Sbjct 4074916 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 4074975
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| ||||| || || || || || || ||||| || || |||||
Sbjct 4074976 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAG 4075035
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||||||||| || |||| || | || | ||||| ||||||
Sbjct 4075036 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 4075095
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||||||| | || ||||| | || |||| ||||| ||
Sbjct 4075096 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGTAT 4075145
>seq3570
Length=216
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || |||||||| |||||| | || || | || || || || ||
Sbjct 6 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCATC 65
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||||| ||||| || || || ||||| || || || || || |||||
Sbjct 66 CGATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 125
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||||| || | |||||| || || |||| ||| | || | ||||| |||||
Sbjct 126 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAA 185
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196
||| || |||||||||||| | || |||||
Sbjct 186 CATCCAGAAGGAGTCGACCCTTCACTTGGT 215
>seq2
Length=21544594
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533
|||||||| |||| |||| |||||| ||| || || ||||||||||| ||| ||||||
Sbjct 4549514 TGTGGAACTCGGCGCAACTGCAGCTCGTGCGCGAGGGAAAAATGCACGGCTTTTTGCGCA 4549573
Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACG 135593
|||| ||||| |||||||| |||||||| |||| | || | | ||||| | | |||
Sbjct 4549574 TGTACTGGGCCAAAAAGATTCTGGAATGGACTGCGACACCGGAACAGGCGTTGGAGTACG 4549633
Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTT 135653
| || | | || || | |||||| | ||||||||||| | || ||||| || || |
Sbjct 4549634 CGATCCTGCTGAACGACAAGTACAGTCTGGATGGACGCGACCCCAACGGCTATGTCGGCT 4549693
Query 135654 G 135654
|
Sbjct 4549694 G 4549694
>seq671
Length=216
Score = 118 bits (130), Expect = 9e-22
Identities = 151/208 (73%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069
||||||| ||| | || || || ||||| || || || ||| | ||||||| || ||
Sbjct 216 TGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCAGACACCATTGAGAATGTGAAGG 157
Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129
|| || |||||||| || || || || || ||||| |||||| | || | ||||||||
Sbjct 156 CTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCA 97
Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189
| || | || || | || |||| || |||||||| || |||||||||||| | |
Sbjct 96 AGCAGCTCGAGGATGGACGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTTC 37
Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| |||||| | ||| |||| ||||| ||
Sbjct 36 ACTTGGTTCTCCGTCTGCGTGGTGGTAT 9
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434876979458880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |