Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq1 235 5e-57
>seq1
Length=23539531
Score = 235 bits (260), Expect = 5e-57
Identities = 447/657 (68%), Gaps = 6/657 (1%)
Strand=Plus/Plus
Query 6542 AGCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCA 6601
||| |||| | |||||| ||||||| || | ||| |||| || || || | || ||
Sbjct 2846079 AGCGGCTCTACGTGGTTGAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCC 2846138
Query 6602 GGAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTG 6661
|| || ||| ||||| || ||||||| |||||||| ||||| || ||||||
Sbjct 2846139 GGCTTCAGACCCGTCACATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTG 2846198
Query 6662 AACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA 6721
|| || || || | |||||||| | || || ||||||||||| |||||||| ||
Sbjct 2846199 AAGGGTACGCCCAGGCCCATGTCGGCGCTTCTCTGGTAGAGCTGGCACGACAGCTCACCG 2846258
Query 6722 ---TTCGCG---ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGG 6775
||| || ||||| || || | | ||||||||| || || |||||| |||
Sbjct 2846259 CGCTTCTCGGAGACGTAAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGG 2846318
Query 6776 AGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAG 6835
| ||| ||| ||||| || |||| | ||| | || ||| ||||| | | | |
Sbjct 2846319 ATGTCCAGCGGATTCCAAGCCGACATGATGATGCGTCGGTCTGAGGGGTTATTCCTGATG 2846378
Query 6836 GTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCC 6895
||||||||||| | |||||||||| ||||| || ||||| | ||||
Sbjct 2846379 GTGTCGATCACCTGGCGCAGCTGGTCGATTCCCTTGCCGCTGTAGTCATCGTCGCAGGTG 2846438
Query 6896 CGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCC 6955
| |||| |||||| || || ||||||||||| ||||| |||||||||| ||||| |
Sbjct 2846439 CCGTACTGCGCCCCGAAATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACG 2846498
Query 6956 TCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATC 7015
| || | ||||||| ||||||||| || |||| || | || | ||||||||
Sbjct 2846499 GCTCGGCCCGTGAACCCCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATG 2846558
Query 7016 TTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGC 7075
| ||| | | | ||| ||||| | ||| ||| ||||||||||||||||
Sbjct 2846559 TGCACATTCTTCGCCTGCAGCAGCTTGGCATCCGTCTTGCCCGCCACGAACCACAGCAGC 2846618
Query 7076 TCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGA 7135
|||||| |||| | || | ||||| ||||| |||||||| ||||| | |||
Sbjct 2846619 TCCTCGGCCACCGCGCGGAAGAAGACACGCTTCGTGGTCAGCAGGGGAAAGGAGTTCCGC 2846678
Query 7136 AGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCC 7192
| || | | || ||| ||||||||||||| || || ||| | | || ||||||
Sbjct 2846679 ATGTCGAAGCGCATCTGACTGCCGAACACGGACAGAGTGCCCACCTCCGTGCGGTCC 2846735
Score = 235 bits (260), Expect = 5e-57
Identities = 447/657 (68%), Gaps = 6/657 (1%)
Strand=Plus/Minus
Query 34153 GGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCG 34212
|||||| || | | ||| || || ||||||||||||| ||| || | | || | ||
Sbjct 2846735 GGACCGCACGGAGGTGGGCACTCTGTCCGTGTTCGGCAGTCAGATGCGCTTCGACATGCG 2846676
Query 34213 GGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCT 34272
| | ||||| |||||||| ||||| ||||| | || | |||| |||||||||
Sbjct 2846675 GAACTCCTTTCCCCTGCTGACCACGAAGCGTGTCTTCTTCCGCGCGGTGGCCGAGGAGCT 2846616
Query 34273 GCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGAT 34332
||||||||||||| ||| ||| | ||||| ||| | | | ||| | ||
Sbjct 2846615 GCTGTGGTTCGTGGCGGGCAAGACGGATGCCAAGCTGCTGCAGGCGAAGAATGTGCACAT 2846556
Query 34333 CTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGA 34392
|||||| | || | || |||| || ||||||||| ||||||| | || | |
Sbjct 2846555 CTGGGATGGGAACAGCTCCAGAGAATTCCTGGACAAGATGGGGTTCACGGGCCGAGCCGT 2846496
Query 34393 GGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGG 34452
||||| |||||||||| ||||| ||||||||||| || || |||||| |||| |
Sbjct 2846495 TGGCGATCTGGGCCCGGTGTACGGCTTCCAGTGGAGGCATTTCGGGGCGCAGTACGGCAC 2846436
Query 34453 GAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT 34512
|||| | ||||| || ||||| |||||||||| | |||||||||||| |
Sbjct 2846435 CTGCGACGATGACTACAGCGGCAAGGGAATCGACCAGCTGCGCCAGGTGATCGACACCAT 2846376
Query 34513 GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572
| | ||||| ||| || | ||| | |||| || ||||| ||| ||| ||||
Sbjct 2846375 CAGGAATAACCCCTCAGACCGACGCATCATCATGTCGGCTTGGAATCCGCTGGACATCCC 2846316
Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT---CGCGAA---TGG 34626
|||||| || || ||||||||| | | || || ||||| || ||| ||
Sbjct 2846315 AAAGATGGCCCTGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCGG 2846256
Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686
|||||||| ||||||||||| || || | |||||||| | || || || |||||
Sbjct 2846255 TGAGCTGTCGTGCCAGCTCTACCAGAGAAGCGCCGACATGGGCCTGGGCGTACCCTTCAA 2846196
Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGG 34746
||| || ||||| |||||||| ||||||| || ||||| ||| || || ||
Sbjct 2846195 CATCGCCTCCTACGCCCTGCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGCCGGG 2846136
Query 34747 GGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCT 34803
|| | || || || |||| ||| | || ||||||| |||||| | |||| |||
Sbjct 2846135 CGACTTTGTTCACACCATGGGCGATACACACGTCTACCTCAACCACGTAGAGCCGCT 2846079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448219708609680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |