Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 235 5e-57 >seq1 Length=23539531 Score = 235 bits (260), Expect = 5e-57 Identities = 447/657 (68%), Gaps = 6/657 (1%) Strand=Plus/Plus Query 6542 AGCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCA 6601 ||| |||| | |||||| ||||||| || | ||| |||| || || || | || || Sbjct 2846079 AGCGGCTCTACGTGGTTGAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCC 2846138 Query 6602 GGAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTG 6661 || || ||| ||||| || ||||||| |||||||| ||||| || |||||| Sbjct 2846139 GGCTTCAGACCCGTCACATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTG 2846198 Query 6662 AACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA 6721 || || || || | |||||||| | || || ||||||||||| |||||||| || Sbjct 2846199 AAGGGTACGCCCAGGCCCATGTCGGCGCTTCTCTGGTAGAGCTGGCACGACAGCTCACCG 2846258 Query 6722 ---TTCGCG---ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGG 6775 ||| || ||||| || || | | ||||||||| || || |||||| ||| Sbjct 2846259 CGCTTCTCGGAGACGTAAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGG 2846318 Query 6776 AGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAG 6835 | ||| ||| ||||| || |||| | ||| | || ||| ||||| | | | | Sbjct 2846319 ATGTCCAGCGGATTCCAAGCCGACATGATGATGCGTCGGTCTGAGGGGTTATTCCTGATG 2846378 Query 6836 GTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCC 6895 ||||||||||| | |||||||||| ||||| || ||||| | |||| Sbjct 2846379 GTGTCGATCACCTGGCGCAGCTGGTCGATTCCCTTGCCGCTGTAGTCATCGTCGCAGGTG 2846438 Query 6896 CGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCC 6955 | |||| |||||| || || ||||||||||| ||||| |||||||||| ||||| | Sbjct 2846439 CCGTACTGCGCCCCGAAATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACG 2846498 Query 6956 TCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATC 7015 | || | ||||||| ||||||||| || |||| || | || | |||||||| Sbjct 2846499 GCTCGGCCCGTGAACCCCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATG 2846558 Query 7016 TTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGC 7075 | ||| | | | ||| ||||| | ||| ||| |||||||||||||||| Sbjct 2846559 TGCACATTCTTCGCCTGCAGCAGCTTGGCATCCGTCTTGCCCGCCACGAACCACAGCAGC 2846618 Query 7076 TCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGA 7135 |||||| |||| | || | ||||| ||||| |||||||| ||||| | ||| Sbjct 2846619 TCCTCGGCCACCGCGCGGAAGAAGACACGCTTCGTGGTCAGCAGGGGAAAGGAGTTCCGC 2846678 Query 7136 AGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCC 7192 | || | | || ||| ||||||||||||| || || ||| | | || |||||| Sbjct 2846679 ATGTCGAAGCGCATCTGACTGCCGAACACGGACAGAGTGCCCACCTCCGTGCGGTCC 2846735 Score = 235 bits (260), Expect = 5e-57 Identities = 447/657 (68%), Gaps = 6/657 (1%) Strand=Plus/Minus Query 34153 GGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCG 34212 |||||| || | | ||| || || ||||||||||||| ||| || | | || | || Sbjct 2846735 GGACCGCACGGAGGTGGGCACTCTGTCCGTGTTCGGCAGTCAGATGCGCTTCGACATGCG 2846676 Query 34213 GGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCT 34272 | | ||||| |||||||| ||||| ||||| | || | |||| ||||||||| Sbjct 2846675 GAACTCCTTTCCCCTGCTGACCACGAAGCGTGTCTTCTTCCGCGCGGTGGCCGAGGAGCT 2846616 Query 34273 GCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGAT 34332 ||||||||||||| ||| ||| | ||||| ||| | | | ||| | || Sbjct 2846615 GCTGTGGTTCGTGGCGGGCAAGACGGATGCCAAGCTGCTGCAGGCGAAGAATGTGCACAT 2846556 Query 34333 CTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGA 34392 |||||| | || | || |||| || ||||||||| ||||||| | || | | Sbjct 2846555 CTGGGATGGGAACAGCTCCAGAGAATTCCTGGACAAGATGGGGTTCACGGGCCGAGCCGT 2846496 Query 34393 GGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGG 34452 ||||| |||||||||| ||||| ||||||||||| || || |||||| |||| | Sbjct 2846495 TGGCGATCTGGGCCCGGTGTACGGCTTCCAGTGGAGGCATTTCGGGGCGCAGTACGGCAC 2846436 Query 34453 GAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT 34512 |||| | ||||| || ||||| |||||||||| | |||||||||||| | Sbjct 2846435 CTGCGACGATGACTACAGCGGCAAGGGAATCGACCAGCTGCGCCAGGTGATCGACACCAT 2846376 Query 34513 GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572 | | ||||| ||| || | ||| | |||| || ||||| ||| ||| |||| Sbjct 2846375 CAGGAATAACCCCTCAGACCGACGCATCATCATGTCGGCTTGGAATCCGCTGGACATCCC 2846316 Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT---CGCGAA---TGG 34626 |||||| || || ||||||||| | | || || ||||| || ||| || Sbjct 2846315 AAAGATGGCCCTGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCGG 2846256 Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 |||||||| ||||||||||| || || | |||||||| | || || || ||||| Sbjct 2846255 TGAGCTGTCGTGCCAGCTCTACCAGAGAAGCGCCGACATGGGCCTGGGCGTACCCTTCAA 2846196 Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGG 34746 ||| || ||||| |||||||| ||||||| || ||||| ||| || || || Sbjct 2846195 CATCGCCTCCTACGCCCTGCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGCCGGG 2846136 Query 34747 GGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCT 34803 || | || || || |||| ||| | || ||||||| |||||| | |||| ||| Sbjct 2846135 CGACTTTGTTCACACCATGGGCGATACACACGTCTACCTCAACCACGTAGAGCCGCT 2846079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448219708609680