Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq7619 145 2e-29
seq1 131 4e-25
seq671 118 3e-21
seq3399 98.7 2e-15
>seq7619
Length=14972
Score = 145 bits (160), Expect = 2e-29
Identities = 133/168 (79%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| |||| || || ||| | || || ||||| ||| |||| ||||| ||| | |||||
Sbjct 1624 CAAATTTATAATGTAATTGTAACTGCACATGCTTTTATTATAATTTTTTTTATAGTTATA 1683
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| |||| || || || |||||||||||||| || |||||||| | ||||||||||||
Sbjct 1684 CCTATTATAATTGGTGGATTCGGAAATTGATTAGTACCTTTAATATTAGGTGCTCCTGAT 1743
Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
|| || |||||| | | || |||||||| |||||||||||||| |||
Sbjct 1744 ATAGCATTTCCACGAATAAATAATATAAGATTTTGATTACTACCCCCT 1791
Score = 98.7 bits (108), Expect = 2e-15
Identities = 81/99 (82%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||||||||||||||||||||| ||||||||||| || | ||||| || ||||| || |
Sbjct 2196 TTCAGGATGACCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCTCCTCCTCCAGC 2137
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
||| |||||||| ||||| ||||||| ||| |||||
Sbjct 2136 TGGGTCAAAAAATGATGTATTTAAATTTCGATCTGTTAA 2098
>seq1
Length=23539531
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || || || || || |||| ||||| |||| || ||| | |||||
Sbjct 4075127 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 4075068
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| || || || || || || ||||| || ||||| ||
Sbjct 4075067 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCC 4075008
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| || | ||||| || || ||||| |||
Sbjct 4075007 TGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTC 4074948
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | ||||| | ||| | |||||
Sbjct 4074947 TTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916
Score = 113 bits (124), Expect = 1e-19
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| |||||||| || || || | || || || | | || | ||||||
Sbjct 10088927 AGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCT 10088868
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || || || || || ||||| ||||| |||||
Sbjct 10088867 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 10088808
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| || ||| |||||| || || || | ||| || || | ||||| |||
Sbjct 10088807 TGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTC 10088748
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|||||||| | || || | ||| | ||||| ||
Sbjct 10088747 TTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 10088713
>seq671
Length=216
Score = 118 bits (130), Expect = 3e-21
Identities = 140/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || || || || || |||| ||||| || | | ||| | |||||
Sbjct 27 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCC 86
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| || || || || || || ||||| || |||||||||
Sbjct 87 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCT 146
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| || ||||||||||| | || || || | ||||| |||
Sbjct 147 TGGATCTTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTC 206
Query 225682 TTGCCCGTCA 225691
|| || ||||
Sbjct 207 TTTCCGGTCA 216
>seq3399
Length=233
Score = 98.7 bits (108), Expect = 2e-15
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655
||| ||| | ||||| || |||| || || || || ||||||||||| || ||||||||
Sbjct 1 TTTTTTTATAGTTATACCTATTATAATTGGTGGATTTGGAAATTGATTAGTGCCTTTAAT 60
Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715
| ||||| |||||||| || || || | | || |||||||| ||||||||||||||
Sbjct 61 ATTAGGTGCCCCTGATATAGCATTCCCGCGAATAAATAATATAAGATTTTGATTACTACC 120
Query 7716 GCCT 7719
|||
Sbjct 121 CCCT 124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192414786967586
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |