Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7619 145 2e-29 seq1 131 4e-25 seq671 118 3e-21 seq3399 98.7 2e-15 >seq7619 Length=14972 Score = 145 bits (160), Expect = 2e-29 Identities = 133/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| | || || ||||| ||| |||| ||||| ||| | ||||| Sbjct 1624 CAAATTTATAATGTAATTGTAACTGCACATGCTTTTATTATAATTTTTTTTATAGTTATA 1683 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || |||||||||||||| || |||||||| | |||||||||||| Sbjct 1684 CCTATTATAATTGGTGGATTCGGAAATTGATTAGTACCTTTAATATTAGGTGCTCCTGAT 1743 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || |||||| | | || |||||||| |||||||||||||| ||| Sbjct 1744 ATAGCATTTCCACGAATAAATAATATAAGATTTTGATTACTACCCCCT 1791 Score = 98.7 bits (108), Expect = 2e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| ||||||||||| || | ||||| || ||||| || | Sbjct 2196 TTCAGGATGACCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCTCCTCCTCCAGC 2137 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| |||||||| ||||| ||||||| ||| ||||| Sbjct 2136 TGGGTCAAAAAATGATGTATTTAAATTTCGATCTGTTAA 2098 >seq1 Length=23539531 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| ||||| |||| || ||| | ||||| Sbjct 4075127 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 4075068 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || ||||| || Sbjct 4075067 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCC 4075008 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || | ||||| || || ||||| ||| Sbjct 4075007 TGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTC 4074948 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||||| | ||| | ||||| Sbjct 4074947 TTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| |||||||| || || || | || || || | | || | |||||| Sbjct 10088927 AGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCT 10088868 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || || || || ||||| ||||| ||||| Sbjct 10088867 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 10088808 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || ||| |||||| || || || | ||| || || | ||||| ||| Sbjct 10088807 TGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTC 10088748 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||| | || || | ||| | ||||| || Sbjct 10088747 TTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 10088713 >seq671 Length=216 Score = 118 bits (130), Expect = 3e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| ||||| || | | ||| | ||||| Sbjct 27 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCC 86 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || ||||||||| Sbjct 87 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCT 146 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || ||||||||||| | || || || | ||||| ||| Sbjct 147 TGGATCTTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTC 206 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 207 TTTCCGGTCA 216 >seq3399 Length=233 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 ||| ||| | ||||| || |||| || || || || ||||||||||| || |||||||| Sbjct 1 TTTTTTTATAGTTATACCTATTATAATTGGTGGATTTGGAAATTGATTAGTGCCTTTAAT 60 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 | ||||| |||||||| || || || | | || |||||||| |||||||||||||| Sbjct 61 ATTAGGTGCCCCTGATATAGCATTCCCGCGAATAAATAATATAAGATTTTGATTACTACC 120 Query 7716 GCCT 7719 ||| Sbjct 121 CCCT 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192414786967586