Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq1 233 2e-56
>seq1
Length=23539531
Score = 233 bits (258), Expect = 2e-56
Identities = 427/634 (67%), Gaps = 6/634 (1%)
Strand=Plus/Plus
Query 29604 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGT 29663
|||| |||||||||||| || | ||| || || | ||||||| || |||||||
Sbjct 2846035 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGT 2846094
Query 29664 CAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29723
||||||||||| | ||| |||| |||||| ||||| || ||||| | || || || |
Sbjct 2846095 TGAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 2846154
Query 29724 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCC 29783
| || || ||||||| ||||| || | |||| ||||||||| ||||| || || || |
Sbjct 2846155 CATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGTACGCCCAGGC 2846214
Query 29784 CCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG------TCGCTCACGT 29837
||||||| | |||||||||||||||||||| ||||| ||| ||| ||||
Sbjct 2846215 CCATGTCGGCGCTTCTCTGGTAGAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACGT 2846274
Query 29838 AAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCC 29897
||||||| || | |||||||| || |||||||| | ||| || ||||
Sbjct 2846275 AAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCC 2846334
Query 29898 AGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTT 29957
| || ||| ||||||||| | |||| ||||| ||||||||| ||| | | |
Sbjct 2846335 AAGCCGACATGATGATGCGTCGGTCTGAGGGGTTATTCCTGATGGTGTCGATCACCTGGC 2846394
Query 29958 GCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGA 30017
||||||| || | ||| | || |||||| |||
Sbjct 2846395 GCAGCTGGTCGATTCCCTTGCCGCTGTAGTCATCGTCGCAGGTGCCGTACTGCGCCCCGA 2846454
Query 30018 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGC 30077
|||||||||||||||| ||||||||||| ||||| || || | | | | | ||| |
Sbjct 2846455 AATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGGCTCGGCCCGTGAACC 2846514
Query 30078 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 30137
|| ||||||||| || |||||||| | ||| | |||||||| | || |||| |
Sbjct 2846515 CCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCCT 2846574
Query 30138 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 30197
||| |||| | || || |||||||||||||||||||| | || ||
Sbjct 2846575 GCAGCAGCTTGGCATCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACCGCGC 2846634
Query 30198 TCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231
| ||||| | ||| || || || ||||||||
Sbjct 2846635 GGAAGAAGACACGCTTCGTGGTCAGCAGGGGAAA 2846668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406125485081434
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |