Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1 233 2e-56 >seq1 Length=23539531 Score = 233 bits (258), Expect = 2e-56 Identities = 427/634 (67%), Gaps = 6/634 (1%) Strand=Plus/Plus Query 29604 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGT 29663 |||| |||||||||||| || | ||| || || | ||||||| || ||||||| Sbjct 2846035 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGT 2846094 Query 29664 CAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29723 ||||||||||| | ||| |||| |||||| ||||| || ||||| | || || || | Sbjct 2846095 TGAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 2846154 Query 29724 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCC 29783 | || || ||||||| ||||| || | |||| ||||||||| ||||| || || || | Sbjct 2846155 CATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGTACGCCCAGGC 2846214 Query 29784 CCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG------TCGCTCACGT 29837 ||||||| | |||||||||||||||||||| ||||| ||| ||| |||| Sbjct 2846215 CCATGTCGGCGCTTCTCTGGTAGAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACGT 2846274 Query 29838 AAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCC 29897 ||||||| || | |||||||| || |||||||| | ||| || |||| Sbjct 2846275 AAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCC 2846334 Query 29898 AGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTT 29957 | || ||| ||||||||| | |||| ||||| ||||||||| ||| | | | Sbjct 2846335 AAGCCGACATGATGATGCGTCGGTCTGAGGGGTTATTCCTGATGGTGTCGATCACCTGGC 2846394 Query 29958 GCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGA 30017 ||||||| || | ||| | || |||||| ||| Sbjct 2846395 GCAGCTGGTCGATTCCCTTGCCGCTGTAGTCATCGTCGCAGGTGCCGTACTGCGCCCCGA 2846454 Query 30018 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGC 30077 |||||||||||||||| ||||||||||| ||||| || || | | | | | ||| | Sbjct 2846455 AATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGGCTCGGCCCGTGAACC 2846514 Query 30078 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 30137 || ||||||||| || |||||||| | ||| | |||||||| | || |||| | Sbjct 2846515 CCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCCT 2846574 Query 30138 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 30197 ||| |||| | || || |||||||||||||||||||| | || || Sbjct 2846575 GCAGCAGCTTGGCATCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACCGCGC 2846634 Query 30198 TCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 | ||||| | ||| || || || |||||||| Sbjct 2846635 GGAAGAAGACACGCTTCGTGGTCAGCAGGGGAAA 2846668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406125485081434