Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq1 255 4e-63
>seq1
Length=23539531
Score = 255 bits (282), Expect = 4e-63
Identities = 440/636 (69%), Gaps = 10/636 (2%)
Strand=Plus/Plus
Query 27098 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGAT 27157
|||| |||||||||||| || | ||| || || ||||||||| || ||||| |
Sbjct 2846035 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGT 2846094
Query 27158 CCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 27217
||||||||||| | || |||| |||||| ||||| || ||||| | || || || |
Sbjct 2846095 TGAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 2846154
Query 27218 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 27277
| || || ||||||| ||||| || | |||| ||||||||| |||||||| || || |
Sbjct 2846155 CATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGTACGCCCAGGC 2846214
Query 27278 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT-------ACG 27330
||||||| | |||||||||||||| ||||| ||||| || ||||| |||
Sbjct 2846215 CCATGTCGGCGCTTCTCTGGTAGAGCTGGCACGACAGCTCACC-GCGCTTCTCGGAGACG 2846273
Query 27331 TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTC 27390
|||||||| | | ||||||||| || || ||||| | ||| || |||
Sbjct 2846274 TAAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTC 2846333
Query 27391 CAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTT 27450
|| || ||| ||||||||| | |||| ||||| ||||||||| ||| | | |
Sbjct 2846334 CAAGCCGACATGATGATGCGTCGGTCTGAGGGGTTATTCCTGATGGTGTCGATCACCTGG 2846393
Query 27451 TGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TACCCTCATGTCCGTGTACTCTGCTCC 27509
||||||| || | ||| | || |||||| | | || || | ||||| || ||
Sbjct 2846394 CGCAGCTGGTCGATTCCCTTGCCGCTGTAGTCATCGTCGCAGGTGC-CGTACTGCGCCCC 2846452
Query 27510 GAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 27569
|||||||||||| ||||| ||||||||||| ||||| || || | | | | | |||
Sbjct 2846453 GAAATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGGCTCGGCCCGTGAA 2846512
Query 27570 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 27629
||| ||||||||| || |||||||| | ||| | |||||||| | || |||| |
Sbjct 2846513 CCCCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGC 2846572
Query 27630 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 27689
||| |||| | || || |||||||||||||||||||| | || ||
Sbjct 2846573 CTGCAGCAGCTTGGCATCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACCGC 2846632
Query 27690 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725
| ||||| | ||| || || || ||||||||
Sbjct 2846633 GCGGAAGAAGACACGCTTCGTGGTCAGCAGGGGAAA 2846668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369472888831589
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |