Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 398 1e-105 >seq1 Length=23539531 Score = 398 bits (440), Expect = 1e-105 Identities = 1210/1856 (65%), Gaps = 24/1856 (1%) Strand=Plus/Plus Query 76770 TTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829 ||||| | || || |||||||| | | | || || || || || ||||||||||| Sbjct 10003394 TTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATT 10003453 Query 76830 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTA 76889 || ||||| ||||| |||| ||| || || ||| ||||| || ||| | Sbjct 10003454 CCGGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTT 10003513 Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 || ||||| | ||| || || | ||||||||| ||||| ||||| || || | ||| || Sbjct 10003514 GGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCG 10003573 Query 76950 GCCATTTTTATAATGGTCTTT--TGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGA 77007 |||||||| || ||| ||| |||| |||||||| | || ||| | | | | | Sbjct 10003574 GCCATTTTAATCGTGGACTTGACTGAG--ATTTCCCACACCGTCTTGTACAGATCTCGCA 10003631 Query 77008 TATCATCTGG---AAGGTTTGTAT--TTTGAATGGAACCACCATCT-GATATAATTGTAT 77061 | ||||| | ||| | || ||||||| || || || || ||||| || | Sbjct 10003632 CCT--TCTGGGGTATGGTCTCAATGTTTTGAATCGATCC-CCTGCTCGATATGATCTGGT 10003688 Query 77062 TCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAA 77121 |||| || || || | |||||| | | || |||| | | | | |||| | || | Sbjct 10003689 TCTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGA 10003748 Query 77122 CTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCA 77181 | | || ||||| || |||| |||| || ||||| || || |||| || || || | Sbjct 10003749 CCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGA 10003808 Query 77182 CAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATA 77241 ||||||||||| |||| || ||||| ||||| ||||| ||||| || || || | | Sbjct 10003809 AGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCA 10003868 Query 77242 AACTATTTCTGAGACCATGTGTTCTGATTTTA-TCTTTTAGATATTTCCAATCCCAAAGA 77300 || | || ||| || |||| | | | || || | | | ||| ||||| || Sbjct 10003869 GTGAGTTCCGGACACCGTGC-TTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGG 10003927 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 | | || || ||||| | ||||| || | |||||| || || | || Sbjct 10003928 TTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCC 10003987 Query 77361 TTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420 | || ||||| || || ||||| || | || ||||| || || |||||||| || || Sbjct 10003988 TCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 10004047 Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCAATACTATCAAAC 77477 || ||||| ||||| || |||| || ||| |||| | | |||| || || || Sbjct 10004048 TAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTCTTCG---CTTTCGTAC 10004104 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 || || | | ||||| |||||||| || |||||||||| ||||| || | || | | Sbjct 10004105 GGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGA 10004164 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || ||| |||||| | | || ||||| | ||||||||||| || || || || || Sbjct 10004165 TGCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTG 10004224 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTTC 77655 || |||||| | ||||| || || ||||| || || |||||| | ||||| Sbjct 10004225 TTTAGATTTTTGGTAACTATCTTTGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTTC 10004284 Query 77656 -CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 | | || |||||||| | || || || || | || || ||||| | ||||| Sbjct 10004285 TCCGGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCC 10004344 Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 | || ||||| | || || || || | || || || || || ||||| | ||| Sbjct 10004345 GGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATTC 10004404 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 || ||||||||||| | ||||| | |||||| | || || ||||| | ||||| || Sbjct 10004405 TGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCC 10004464 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGC 77894 | || | || || || | ||| | | | ||| || | | | ||| || Sbjct 10004465 ACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCCGA 10004524 Query 77895 CTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT 77954 | |||| || |||| || ||| ||| |||||||| ||||| || || | | Sbjct 10004525 CCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGA 10004584 Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 || || || | | |||||||| | ||||| ||||| | ||| || |||||||| Sbjct 10004585 CCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATG 10004644 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 |||||||| |||||||| || || ||| ||||| || | | || ||||| || || Sbjct 10004645 AAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCC 10004704 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 || ||||| || || || || ||||| | | ||| || ||||| ||||| ||||| || Sbjct 10004705 GTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATG 10004764 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | || || || || ||||||||||| | ||| | || |||||| | Sbjct 10004765 GCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTAAAG 10004824 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 || |||| ||| |||| | || || || || |||||||| || |||| | | || Sbjct 10004825 ACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCC 10004884 Query 78255 CTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 |||| ||||| | | | | || || || || || ||| || || | ||| Sbjct 10004885 TTTGCACGAATGCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCG 10004944 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAA 78374 || ||| || | | | | || ||||| || ||| || ||||| | ||||| ||| Sbjct 10004945 CATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAAGGAAA 10005004 Query 78375 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTA 78434 || |||| || | | || | || ||| | ||| || |||||||| || Sbjct 10005005 CACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGTGTG 10005064 Query 78435 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGA 78494 || | || || || ||||| || ||||| | |||| || || ||| | ||| Sbjct 10005065 AAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCCTCTCCATGG 10005124 Query 78495 ATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATT 78554 ||||| | ||| || ||||||| ||||||||| |||| || | |||| ||| | Sbjct 10005125 ATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCTC 10005184 Query 78555 TTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610 || | || || || |||| || || || ||||||||||| || |||||| Sbjct 10005185 TTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAAGTC 10005240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694602641480160