Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 398 1e-105 >seq1 Length=23539531 Score = 398 bits (440), Expect = 1e-105 Identities = 1226/1883 (65%), Gaps = 24/1883 (1%) Strand=Plus/Plus Query 75365 TTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATA 75424 ||||| | || ||||||||||||| | | ||||| || || || ||||||||||| Sbjct 10003394 TTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATT 10003453 Query 75425 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTC 75484 || ||||| ||||| |||| ||| || || ||| || || || ||| | Sbjct 10003454 CCGGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTT 10003513 Query 75485 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 75544 || ||||| | ||| || || | ||||||||| ||||| ||||| || || | ||| || Sbjct 10003514 GGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCG 10003573 Query 75545 GCCATTTTTATAATGGTCTTT--TGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGA 75602 |||||||| || ||| ||| |||| |||||||| | || ||| | | | | | Sbjct 10003574 GCCATTTTAATCGTGGACTTGACTGAG--ATTTCCCACACCGTCTTGTACAGATCTCGCA 10003631 Query 75603 TATCATCTGG---AAGATTTGTAT--TTTGAATGGATCCGCCATCAGATATAATTGTATT 75657 | ||||| | | | | || ||||||| ||||| | ||||| || || Sbjct 10003632 CCT--TCTGGGGTATGGTCTCAATGTTTTGAATCGATCCCCTGCTCGATATGATCTGGTT 10003689 Query 75658 CTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAAC 75717 ||| || || || | |||||| | ||||||| | | | | |||| | || || Sbjct 10003690 CTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 10003749 Query 75718 AATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCAC 75777 | || ||||| || |||| |||| || ||||| || || |||| || || || | Sbjct 10003750 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAA 10003809 Query 75778 AGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAA 75837 ||||||||||| |||| || ||||| || || ||||| ||||| || || || | | Sbjct 10003810 GGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 10003869 Query 75838 ACTATTTCTGAGACCATGTGTTCTGATTTTA-TCTTTTAGATATTTCCAATCCCAAAGAT 75896 || | || ||| || |||| | | | || || | | | ||| ||||| || | Sbjct 10003870 TGAGTTCCGGACACCGTGC-TTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 10003928 Query 75897 CTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCAT 75956 | ||| || ||||| | ||||| || | |||||| ||||| | || | Sbjct 10003929 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 10003988 Query 75957 TATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGT 76016 || |||||||| | || || | | || |||||||| || || || || || || | Sbjct 10003989 CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCAT 10004048 Query 76017 AATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 | ||||| ||||| || |||| || ||| |||| | ||||| || || | || Sbjct 10004049 AGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCG-GCTTCTTCGCTTTCGTACGGG 10004107 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 || | | ||||| || ||||| || | |||||||| ||||| || | || | ||| Sbjct 10004108 AAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATGC 10004167 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 ||| |||||| | || ||||| | || |||||||| ||||| || || || || Sbjct 10004168 CTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTTT 10004227 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA----TTTTCC 76251 |||||| || ||||| || || ||||| || || |||||| | || ||| Sbjct 10004228 AGATTTTTGGTAACTATCTTTGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTTCTCC 10004287 Query 76252 ATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGC 76311 | | || ||||| || || || || || || | || || || || | ||||| | Sbjct 10004288 GGCG-TGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGG 10004346 Query 76312 ATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTG 76371 || ||||| | || |||||||| | || || ||||| || || || | ||| || Sbjct 10004347 TGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATTCTG 10004406 Query 76372 TTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAAT 76431 ||||||||||| |||| || | |||||| | || | ||||| |||| || || | Sbjct 10004407 CTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCAC 10004466 Query 76432 CTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTT 76491 || | || || || | ||| | | | ||| || | | ||| || Sbjct 10004467 TTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCCGACC 10004526 Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||| || |||| || | | ||| |||||||| ||||| || || | | ||| Sbjct 10004527 CTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACC 10004586 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||||| | | || ||||| | ||||| ||||| | ||| || |||||||| || Sbjct 10004587 TGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAA 10004646 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 |||||| |||||||| || || ||| ||||| || | | | ||||| || || || Sbjct 10004647 GAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGT 10004706 Query 76672 ATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 ||||| || || || |||||||| | | ||| || ||||| ||||| ||||| || || Sbjct 10004707 GTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATGGC 10004766 Query 76732 CATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAAC 76791 | |||| || || || ||||||||||| | ||| | || |||||| | || Sbjct 10004767 AAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTAAAGAC 10004826 Query 76792 TCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACA 76851 |||| ||| |||| | || || || ||||||||||| || |||| | | || Sbjct 10004827 CCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTT 10004886 Query 76852 TGCACGAAT--ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 ||||||||| | | | | | || || || || || || || ||||| | || Sbjct 10004887 TGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCATGGCG 10004944 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAA 76969 || ||| || | | | |||||||| || || || ||||| | ||||| ||| Sbjct 10004945 CATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAAGGAAA 10005004 Query 76970 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTG 77029 || |||| || | | || | || ||||| ||| || |||||||| ||| Sbjct 10005005 CACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGTGTG 10005064 Query 77030 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGA 77089 || | || || || ||||| || ||||| | |||| || |||||| | ||| Sbjct 10005065 AAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCCTCTCCATGG 10005124 Query 77090 ATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATT 77149 ||||| | || || ||||||| ||||||||| ||||| ||| | |||| ||| | Sbjct 10005125 ATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCTC 10005184 Query 77150 TTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTT 77209 || | || || || |||| || || || ||||||||||| || |||||| | Sbjct 10005185 TTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAAGTCACGA 10005244 Query 77210 TCGTAAATAATAACCGAATTTAG 77232 || || || || ||| ||||| Sbjct 10005245 TCATAGATTATGGACGAGTTTAG 10005267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712866501910080