Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq4 134 3e-26
seq9 114 3e-20
seq1 111 4e-19
seq3570 109 1e-18
seq671 89.7 1e-12
>seq4
Length=24153973
Score = 134 bits (148), Expect = 3e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || | ||||| || ||||| || |||||||||||||||| | || |
Sbjct 3789609 GAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCG 3789668
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| ||||| || || ||||||||||| || | |||||| || | | |||||| ||
Sbjct 3789669 TCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTC 3789728
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || ||||| || || ||| |||| | | |||| || ||| || || | |||
Sbjct 3789729 CTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGT 3789788
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| ||||||||||||||||||| ||||||
Sbjct 3789789 GATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827
Score = 91.5 bits (100), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 17/227 (7%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| || ||||| || |||||||||||||||| | || | || ||||| |
Sbjct 3789849 CAAG-TGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCA 3789907
Query 151957 G--GCTTTTC--------------CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000
| |||| | ||||||||||| || | |||||| || | | |||
Sbjct 3789908 GTTGCTTGCCGGTGGATGAGGCTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATT 3789967
Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060
|| ||||| || ||||| || || ||| |||| | | |||| || |||||| ||
Sbjct 3789968 CCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCAATGGTGTCAGACGGCTCTACCTCG 3790027
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || || || || || | |||||||| |||| |||||||||
Sbjct 3790028 AGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 3790074
>seq9
Length=20829647
Score = 114 bits (126), Expect = 3e-20
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | ||||| || ||||| || ||||||||||| |||| | ||| | || ||
Sbjct 5792256 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCC 5792315
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| ||||||||||| | | |||||| || | | |||||| ||||| |
Sbjct 5792316 TCCAGCTGCTTT--CCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGT 5792373
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || ||||| |||| | | | || || ||| || || | ||| || |
Sbjct 5792374 CCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGG 5792433
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| || |||||||||||||||| ||||||
Sbjct 5792434 TCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 5792467
Score = 98.7 bits (108), Expect = 2e-15
Identities = 153/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | ||||| || ||||| || ||||||||||| |||| | ||| | || ||
Sbjct 5792484 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCC 5792543
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| |||||||| || | | |||||| || | | |||||| ||||| |
Sbjct 5792544 TCCAGCTGCTTT--CCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGT 5792601
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || |||||| |||| | | | || || ||| || || | || || |
Sbjct 5792602 CCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGG 5792661
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
| ||||| || |||||||| ||||| | ||||| ||
Sbjct 5792662 TCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATATT 5792698
>seq1
Length=23539531
Score = 111 bits (122), Expect = 4e-19
Identities = 150/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| || ||||||||||| |||| | ||| | ||||| || |
Sbjct 4075122 CAAG-TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCA 4075064
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||||||||| || | |||||| || | | || || ||||| || || |
Sbjct 4075063 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGGA 4075004
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| |||| | | |||| ||| ||| || || | || || || ||||
Sbjct 4075003 TCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 4074944
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| || |||||||||| ||||||
Sbjct 4074943 CGGTGAGGGTTTTCACGAAGATCTGCAT 4074916
Score = 107 bits (118), Expect = 4e-18
Identities = 151/211 (72%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| ||||| || || ||||| || || | | || | |||||||| |
Sbjct 10088922 CAAG-TGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCA 10088864
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || |||||||| || | |||||| || | | |||||||| || || ||||
Sbjct 10088863 GCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAA 10088804
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || ||||||| | || | | || || || || |||||||| || || ||||
Sbjct 10088803 TCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGC 10088744
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||||| ||||| ||||||| |||||| ||
Sbjct 10088743 CCGTGAGGGTCTTAACGAAGATCTGCATCTT 10088713
>seq3570
Length=216
Score = 109 bits (120), Expect = 1e-18
Identities = 152/210 (72%), Gaps = 5/210 (2%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| || ||||| || ||||||||||| |||| | ||| | || || || |
Sbjct 213 CAAG-TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCA 155
Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| ||||| ||||||||||| | | |||||| || | | |||||| ||||| || ||
Sbjct 154 GCTGCTTT--CCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 97
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
|| || ||||| |||| | | | || || ||| || || | || || || ||
Sbjct 96 GATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTT 37
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| || |||||||||||||||| ||||||
Sbjct 36 GCCAGTCAGAGTCTTCACGAAGATCTGCAT 7
>seq671
Length=216
Score = 89.7 bits (98), Expect = 1e-12
Identities = 131/184 (71%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| || ||||| || ||||||||||| || | | ||| | ||||| || |
Sbjct 32 CAAG-TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTCGA 90
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||||||||| || | |||||| || | | ||||| ||||| ||||| |
Sbjct 91 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGA 150
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || || ||| |||| | | ||||||| ||| ||||| || || || || || |
Sbjct 151 TCTTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTTTC 210
Query 152077 CCGT 152080
| ||
Sbjct 211 CGGT 214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153708165816349
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |