Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4 134 3e-26 seq9 114 3e-20 seq1 111 4e-19 seq3570 109 1e-18 seq671 89.7 1e-12 >seq4 Length=24153973 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||| || ||||| || |||||||||||||||| | || | Sbjct 3789609 GAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCG 3789668 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || || ||||||||||| || | |||||| || | | |||||| || Sbjct 3789669 TCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTC 3789728 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || || ||| |||| | | |||| || ||| || || | ||| Sbjct 3789729 CTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGT 3789788 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||||||||||||||||| |||||| Sbjct 3789789 GATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827 Score = 91.5 bits (100), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 17/227 (7%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| || |||||||||||||||| | || | || ||||| | Sbjct 3789849 CAAG-TGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCA 3789907 Query 151957 G--GCTTTTC--------------CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||| | ||||||||||| || | |||||| || | | ||| Sbjct 3789908 GTTGCTTGCCGGTGGATGAGGCTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATT 3789967 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || ||||| || ||||| || || ||| |||| | | |||| || |||||| || Sbjct 3789968 CCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCAATGGTGTCAGACGGCTCTACCTCG 3790027 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || || | |||||||| |||| ||||||||| Sbjct 3790028 AGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 3790074 >seq9 Length=20829647 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||| || ||||| || ||||||||||| |||| | ||| | || || Sbjct 5792256 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCC 5792315 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| | | |||||| || | | |||||| ||||| | Sbjct 5792316 TCCAGCTGCTTT--CCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGT 5792373 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || ||||| |||| | | | || || ||| || || | ||| || | Sbjct 5792374 CCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGG 5792433 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || |||||||||||||||| |||||| Sbjct 5792434 TCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 5792467 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||| || ||||| || ||||||||||| |||| | ||| | || || Sbjct 5792484 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCC 5792543 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| |||||||| || | | |||||| || | | |||||| ||||| | Sbjct 5792544 TCCAGCTGCTTT--CCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGT 5792601 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || |||||| |||| | | | || || ||| || || | || || | Sbjct 5792602 CCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGG 5792661 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||| || |||||||| ||||| | ||||| || Sbjct 5792662 TCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATATT 5792698 >seq1 Length=23539531 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| |||| | ||| | ||||| || | Sbjct 4075122 CAAG-TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCA 4075064 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | |||||| || | | || || ||||| || || | Sbjct 4075063 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGGA 4075004 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| |||| | | |||| ||| ||| || || | || || || |||| Sbjct 4075003 TCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 4074944 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || |||||||||| |||||| Sbjct 4074943 CGGTGAGGGTTTTCACGAAGATCTGCAT 4074916 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || || ||||| || || | | || | |||||||| | Sbjct 10088922 CAAG-TGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCA 10088864 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | |||||| || | | |||||||| || || |||| Sbjct 10088863 GCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAA 10088804 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||||| | || | | || || || || |||||||| || || |||| Sbjct 10088803 TCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGC 10088744 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||||| ||||| ||||||| |||||| || Sbjct 10088743 CCGTGAGGGTCTTAACGAAGATCTGCATCTT 10088713 >seq3570 Length=216 Score = 109 bits (120), Expect = 1e-18 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| || ||||||||||| |||| | ||| | || || || | Sbjct 213 CAAG-TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCA 155 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| | | |||||| || | | |||||| ||||| || || Sbjct 154 GCTGCTTT--CCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 97 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || ||||| |||| | | | || || ||| || || | || || || || Sbjct 96 GATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTT 37 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || |||||||||||||||| |||||| Sbjct 36 GCCAGTCAGAGTCTTCACGAAGATCTGCAT 7 >seq671 Length=216 Score = 89.7 bits (98), Expect = 1e-12 Identities = 131/184 (71%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| || ||||||||||| || | | ||| | ||||| || | Sbjct 32 CAAG-TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTCGA 90 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | |||||| || | | ||||| ||||| ||||| | Sbjct 91 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGA 150 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | ||||||| ||| ||||| || || || || || | Sbjct 151 TCTTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTTTC 210 Query 152077 CCGT 152080 | || Sbjct 211 CGGT 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153708165816349