Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1 145 2e-29
seq3570 141 2e-28
seq9 141 2e-28
seq4 141 2e-28
seq671 131 4e-25
>seq1
Length=23539531
Score = 145 bits (160), Expect = 2e-29
Identities = 156/205 (76%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||||||||| ||||| || || || |||||| | |||||||| || |||
Sbjct 4074919 CAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCTGAC 4074978
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| ||||| ||||| ||||| || || || || || || || |||||
Sbjct 4074979 ACCATCGAGAATGTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAGCAG 4075038
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || ||||| | ||||| |||| || ||| ||
Sbjct 4075039 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATC 4075098
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || ||||| ||||
Sbjct 4075099 CAGAAGGAGTCGACCCTGCA-CTTG 4075122
Score = 145 bits (160), Expect = 2e-29
Identities = 156/205 (76%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || ||||| || ||||| ||| || ||
Sbjct 10088719 CAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGAT 10088778
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || |||||| ||||||||||||||||||||||| ||||| || |||||
Sbjct 10088779 ACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 10088838
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || ||||| |||||||| | || || | || |||||| |
Sbjct 10088839 CGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATT 10088898
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || ||||| ||||
Sbjct 10088899 CAGAAGGAGTCCACTCTGCA-CTTG 10088922
>seq3570
Length=216
Score = 141 bits (156), Expect = 2e-28
Identities = 155/205 (76%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| ||||| || || || || |||||| | ||||| || || ||
Sbjct 10 CAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCATCCGAT 69
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||||||||| ||||| |||||||| || |||||||| || || |||||
Sbjct 70 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 129
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||||||||| ||||| || || ||| | ||||| |||| || ||| ||
Sbjct 130 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATC 189
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 190 CAGAAGGAGTCGACCCTTCA-CTTG 213
>seq9
Length=20829647
Score = 141 bits (156), Expect = 2e-28
Identities = 155/205 (76%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| ||||| || || || || ||||| | ||||| || || ||
Sbjct 5792464 CAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCCGAT 5792405
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||||||||| ||||| |||||||| || |||||||| || || |||||
Sbjct 5792404 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 5792345
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||||||||| ||||| || || ||| | ||||| |||| || ||| ||
Sbjct 5792344 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATC 5792285
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 5792284 CAGAAGGAGTCGACCCTTCA-CTTG 5792261
Score = 136 bits (150), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || || || || |||||| | ||||| || || ||
Sbjct 5792692 CAAATTTTCGTTAAGACTCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCATCCGAT 5792633
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| ||||| ||||| |||||||| || |||||||| || || |||||
Sbjct 5792632 ACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 5792573
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || ||||||||||| ||||| || || ||| | ||||| |||| || ||| ||
Sbjct 5792572 CGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATC 5792513
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 5792512 CAGAAGGAGTCGACCCTTCA-CTTG 5792489
>seq4
Length=24153973
Score = 141 bits (156), Expect = 2e-28
Identities = 155/205 (76%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| |||||||| || || || ||||| | ||||| || || |||
Sbjct 3789824 CAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCGGAC 3789765
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || ||||||||||| || || |||||||| || || |||||
Sbjct 3789764 ACCATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAGCAG 3789705
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || || || ||||| ||| | || || ||||||| ||| ||
Sbjct 3789704 CGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAACATC 3789645
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || ||||| || || ||||
Sbjct 3789644 CAGAAGGAGTCAACCCTTCA-CTTG 3789621
Score = 109 bits (120), Expect = 1e-18
Identities = 163/233 (70%), Gaps = 20/233 (9%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || ||||| || | || ||||| || |||||||||||||| ||
Sbjct 3790074 AAAATGC---AGATCTTTGTGAAGACCTTGACCGGAAAGACCATCACCCTCGAGGTAGAG 3790018
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| |||||||| ||||| || || ||||||||||| || || ||||| || ||
Sbjct 3790017 CCGTCTGACACCATTGAGAATGTTAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCA 3789958
Query 178035 GACCAGCAACGACTTATCTTCGCCGGA----------------AAACAGCTCGAAGATGG 178078
|| ||||| || || |||||||||||| || || || ||||| ||
Sbjct 3789957 GATCAGCAGCGTCTGATCTTCGCCGGAAGCCTCATCCACCGGCAAGCAACTGGAAGACGG 3789898
Query 178079 AAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131
| | || || ||||||| ||| |||| || || ||||| || || |||| ||
Sbjct 3789897 ACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCAACCCTTCA-CTTGGTT 3789846
>seq671
Length=216
Score = 131 bits (144), Expect = 4e-25
Identities = 142/187 (76%), Gaps = 1/187 (1%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| ||||| || |||||||| || || || ||||||||||| ||||| || ||
Sbjct 214 ACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCAGACACCATTGAGAATGTGAAGGCT 155
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| || ||||| || ||||| ||||| || ||||| || || ||||||||||| ||
Sbjct 154 AAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 95
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| |||||| | |||||| | || || ||| |||| || || || || || ||
Sbjct 94 CAGCTCGAGGATGGACGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTTCA- 36
Query 178125 CTTGTTT 178131
|||| ||
Sbjct 35 CTTGGTT 29
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203613693641086
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |