Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4563 127 2e-24 >seq4563 Length=14502029 Score = 127 bits (140), Expect = 2e-24 Identities = 359/547 (66%), Gaps = 6/547 (1%) Strand=Plus/Minus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||||||| || || |||||||| || |||||||| | | |||||| ||||| || Sbjct 3739604 AACATCAGCACGGCAAAGTCGCAATGCAAGCCCTCGTCGCGGGAGATAAGCTCGTTGGAG 3739545 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || |||| || |||||| || || ||||| | ||| || || | ||| || || Sbjct 3739544 AAGGTCAGTCCCGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCG 3739485 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 ||||| || |||||||||| || || || || | || || || | | || | Sbjct 3739484 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCAATGATGCGCTCCCCGAAATTGGCCGAT 3739425 Query 17135 TTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATCGTT 17191 ||| | || ||||| | |||| || || || |||| | || | ||| || Sbjct 3739424 TTGG-AGGAGATCCAGGAAAGGGCCCAGTCCGCCTTGCGCTTCA--CAGCCGGCATTGTC 3739368 Query 17192 TCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 || ||||| || || | | || | || | || || || || ||||| || Sbjct 3739367 TCGATGGCGTTGAACAGGTAGTCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGC 3739308 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 | ||||||||||| ||||| | |||||||||||| || || || || || ||||| || Sbjct 3739307 ACACTGTACATTTCCGAGTGCACGTTCTCCATGGCGATTTGGAAGCCATAGAAGCACCGA 3739248 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 || |||| || || || ||| ||| || ||| | || || |||||||||||||| Sbjct 3739247 GCCTCCGTGATCTGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTCACGATGCCA 3739188 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA 17431 ||| ||||| || || |||| | ||| ||||| | |||||| | || Sbjct 3739187 TCGGATGCGGCAAAGAAGGCCAGCACGTGCGAGATGAAGTGACGTTCGTCGTCCTTCAGG 3739128 Query 17432 ACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCC 17491 | ||||||| | | || ||||| | |||||| || || |||||| ||| ||| Sbjct 3739127 CGGTGCCAGTCGGTCAGGTCCTTGGACAGATCCACCTCCTCCACGGTCCAGAAAGAGGCC 3739068 Query 17492 ACTGCCT 17498 | |||| Sbjct 3739067 TCAGCCT 3739061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517489446302400