Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 379 2e-100 >seq1 Length=22559587 Score = 379 bits (420), Expect = 2e-100 Identities = 1222/1886 (65%), Gaps = 34/1886 (2%) Strand=Plus/Plus Query 52795 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGT---TTCGTACGTAGATAGTA 52851 || |||||| | ||||| ||||| |||| ||| | | || || || || || || Sbjct 20041581 ATTCTTGTCTACAGTGAACTGAAT---AGCGTTTGCAGCTGGCTTTGTGCGCAGGTAATA 20041637 Query 52852 CATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATA 52911 |||||| ||||||||||| |||| ||||| || || || ||||| || Sbjct 20041638 CATTCCAGTTTTTAGACCAGCTTTCCAGGAATAAAAGTGTATGGAAGTAAGTTTTCCGTA 20041697 Query 52912 ACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTC 52971 | || ||||| | ||| || || | || ||||| ||||| || || || || | || Sbjct 20041698 GTTTGGCTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATAAACGCACCTCGATC 20041757 Query 52972 TGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCT 53030 ||| ||||| || || | | |||| || |||||||| | |||||| || | |||| Sbjct 20041758 TGCGGCCATCTTAATAGTGGACTTTACTGAGATTTCCCACACAGTTTTGTACAGATCGCG 20041817 Query 53031 TAATATCTTCTGGAAGGTTTG--TATTCTGAATAGATCCACCATCTACCA-TAATCCTAT 53087 | ||| ||| || | |||| || || || || || || | | || | Sbjct 20041818 AACCTTCTGGGGGATGGCCTCAATATTTTGGATTGAGCC-CCTGCTGGAAATGATTTGGT 20041876 Query 53088 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 53147 |||| || || || | ||| || | ||| |||| | || | | ||| | |||| Sbjct 20041877 TCTTCATATCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAA 20041936 Query 53148 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 53207 | ||||| ||||||||||||| |||| || || |||||||| | || || || || | Sbjct 20041937 CCACTTGGAATTCTCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTAAGGCTCGA 20041996 Query 53208 CAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 53267 || || || || |||| |||||||||||| || ||||| |||||||| || ||||| | Sbjct 20041997 ATGATTCGTTGTTACCCATAATTTGAGCAGTAGAAGCAGTGGGCATAGGAGCAACCAACA 20042056 Query 53268 AACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGAT 53327 || | | ||||| | |||| || || || | ||| | |||||| | Sbjct 20042057 GGGAGTTCCGGACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGT 20042116 Query 53328 CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTA 53387 || || | || ||||| || || || || ||| Sbjct 20042117 TCGTTGGCTCTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCACGGGGCTTCCCT 20042176 Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| ||||| ||| || ||||||||||| || || || || |||| Sbjct 20042177 CATAGGTTTCATATGGACCTTCGATCTGGGCCAGTTCACAACTGGCTTCCAAAGCGCCGT 20042236 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATGGA 53506 | || || |||||||| |||| || ||| | || | ||||| || ||| | || Sbjct 20042237 AGTAGATAGTTTCGAAAATCTGCTGATTCAAGAGGCCG-GCTTCATCACTTTCATAGGGG 20042295 Query 53507 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 53566 | | |||||| || ||||| || ||||| || ||||| || || | || | ||| Sbjct 20042296 AACCGCATGAGAATCAAGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGATGC 20042355 Query 53567 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 53626 ||| ||| || | | || ||||| | || || | |||||||| || || || || Sbjct 20042356 CTCAAATTGGATTTCTTGGCCTCTGGCAGGGGGTAGAAGTTAATATCGATTATCTTGTTA 20042415 Query 53627 AGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCT 53686 || || || || ||| || ||||| ||||| ||||| || ||| ||| Sbjct 20042416 AGATTCTTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTTGAAATCGTAT-GTCT-TCT 20042473 Query 53687 A-----TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAG 53741 | ||||||||||| | || || ||||||| || ||||| || | ||||| | Sbjct 20042474 CGGGAGTGACAAACATGTTGAGGGCGATGGATGCCAAGTTGCAAACTGCAATCTCATCCG 20042533 Query 53742 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 53801 | | | ||| | || || || ||||| | ||| |||||||||||||| || | ||| | Sbjct 20042534 GAGCGGAATACTCTACGATTTCTGTGCACAAATTGCTACACTTGATGGTGCCGACATTCT 20042593 Query 53802 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAA 53861 | || || ||||| |||| || ||||||||| | | ||| | || | |||||||| | Sbjct 20042594 GCTGGTTGCTCTTCCTGTTGCAGGCATCCTTAAACAACATGTAGGGGTTTCCAGTTTCGA 20042653 Query 53862 TCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTAT-CTC 53920 ||| | ||| ||||| || ||| | | ||||||| | || | ||| | | Sbjct 20042654 CCTGTGCTTCAATAATGGCAAACCACAGGGATTGAGCCTTAAC---AGTTCTGTTGGCAC 20042710 Query 53921 TTTTCTCTTTCGTATAGTGT--ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCA 53978 ||||| | ||| | |||||| ||| || || || ||||| |||| || | Sbjct 20042711 GACCCTCTTGCTCATATTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAA 20042770 Query 53979 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 54038 ||||| |||| || || ||||| | |||||| ||||| | ||| || || |||| Sbjct 20042771 GCCCAGGGCATTTATGTGGGCACATTAGCGACCAATCTCCATTGGCCTCGACGCGCTTCA 20042830 Query 54039 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 54098 |||||||||| || ||||| || || ||| ||||| | || | || |||||| || | Sbjct 20042831 TAAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGGGCCCGATTTTCCTCCTTGC 20042890 Query 54099 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 54158 | || || || ||||| || |||||| | | | ||| || ||||| || |||| ||| | Sbjct 20042891 CGGTGTTTTTCTTAAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAA 20042950 Query 54159 TGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 54218 ||| | | || || || ||| ||||| ||||| | || | || || || Sbjct 20042951 TGGCAAAGGCACCGGGACGCTTGCCACCTCCTTGATCCACATAACGCGCCACATTGTTGA 20043010 Query 54219 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 54278 | || |||||||| |||| | |||||||||| ||||| || ||| | || || | | Sbjct 20043011 AGACCCTCAACATGGGAACCAAGCCATTGGATGTGCCATTCGTTCCGCAAATCGAGGTGC 20043070 Query 54279 CACTGGCACGAATATTACTAATTGA----TAGACCTATCCCCCCTGCCATTTTAGAGATT 54334 | | || || || ||| || || || || || || ||| ||| ||||| Sbjct 20043071 CCTTTGCCCGGAT----GCAATGGACGTTAAGTCCAATGCCGCCGGCCGATTTCGAGATC 20043126 Query 54335 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 54394 || || || ||| | | | | | |||||||| ||| || || ||||| | | Sbjct 20043127 AAGGCACACTGTTCCACGGACTTAAAAATGCCCTCGATAGAGTCGGCCGTCATGGTCAAG 20043186 Query 54395 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 || || || |||| || | ||| | || | || ||| | || || || || Sbjct 20043187 AGGAAGCAAGACGACAGCTGCGGGCGATTTGTGGCAGCGGCAAAAAGTGTTGGCGACGCA 20043246 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCAT 54514 ||||| || || || || | ||||| || || || | || | ||||||||| Sbjct 20043247 TGCGTGAAGTATCGCTCCGACAAGAGATTATAAGTTTCCACGGCCGCATCTATATCCTCC 20043306 Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574 ||| ||||| | || || ||||| ||||| || || || | || | || || | Sbjct 20043307 CCATGGATTCCGATCGCCACGCGCATCAACATATGTTGCGGACGCTCTGCAATTTTTCCG 20043366 Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634 ||| | ||||||| ||||| ||| | || ||||| ||||| ||||| || |||| Sbjct 20043367 TTTCTCTTCAGCAGATAGGAACGTTCTAGGGTCTTAAACCCAAAGTAGTTATACCCAAAG 20043426 Query 54635 TCTCGTTCGTAAATAATAACTGAGTT 54660 || || ||||| || ||| ||||| Sbjct 20043427 TCGCGGTCGTAGATTATAGAAGAGTT 20043452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593657181206400