Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1 315 8e-81 >seq1 Length=22559587 Score = 315 bits (348), Expect = 8e-81 Identities = 568/829 (69%), Gaps = 20/829 (2%) Strand=Plus/Minus Query 145575 GTAGCCCTCCAGCGCAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAG 145634 |||||| | | | ||||||| || | |||||| || ||||||| |||| | | | Sbjct 6128363 GTAGCCGACTATCTCAAAGTCTTCGTAGCGGAAGTCCTCGATGTCCTGCACCTGGCGCTT 6128304 Query 145635 GATCCTGAGCCTGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCAC 145694 |||| ||| | || ||||| || || | | |||||| |||||| |||||||| Sbjct 6128303 GATCACCAGCTTAGGGAAGGGACGCGGCGTGCGCTCCAGCTGCTCCTTCAGCGGCTCCAC 6128244 Query 145695 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCC 145754 ||||| ||||||| ||||| ||| |||| | ||| | ||||| ||||||| || || Sbjct 6128243 ATGGTTCAGGTAGATGTGCGTGTCGCCCATGGTGTGCACAAAGTCTCCGGGCTTCAGACC 6128184 Query 145755 CGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCC 145814 ||| | ||||||| ||||| ||| ||||||| |||| ||| |||||||||||||| || Sbjct 6128183 CGTCACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACGCC 6128124 Query 145815 CAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC----- 145869 ||| |||||||| | | |||||||||||||||||| ||||| |||| || | Sbjct 6128123 CAGGCCCATGTCGGCGCTCCTCTGGTACAGCTGGCAGGAAAGCTCACCGCGCGTCTCTGA 6128064 Query 145870 -ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGG 145928 ||||||||||| |||| |||||| || || |||||||| || | |||| || Sbjct 6128063 GACGTAGAACTGTGCCAGGCAGTGGCATGGAGGAAGGGCCATCTTTGGTATGTCCAGTGG 6128004 Query 145929 GTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAG 145988 ||||| || | | || || | |||| | || || ||||||| | | |||| Sbjct 6128003 ATTCCATGCCGACATGATGATGCGCCTGTCCGAAGGATTATTCTTGATGGTCTCGATCAC 6127944 Query 145989 GTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTC-TTGGAGTCCACGTACGCGG 146047 | | |||||||| | ||||| || |||||| ||| | | | | ||||| | | Sbjct 6127943 CTGGCGCAGCTGGTCGATGCCCTTGCCGTTGTAATC-GTCGTCGCATTTGCCGTACTCCG 6127885 Query 146048 CCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCC------CGGGCTCCC 146101 |||| || || | ||||||||| ||||| || || |||||||| | || ||||| Sbjct 6127884 CCCCAAAATGACGCCACTGGAAGCCGTATACCGGGCCCAGGTCGCCGACGGCGCGCTCCG 6127825 Query 146102 TGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGA 146161 ||||||||||| | || ||||| |||| || | ||| |||||||||| | | Sbjct 6127824 TGTGCCCCAGCTTGTCC------AGGAACTCCCTGGTGCTGTTCTCGTCCCAGATGTGCA 6127771 Query 146162 CGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTT 146221 || | | | ||| |||| |||||| || | ||||||||||||||| | Sbjct 6127770 CGTTCTTATCCTGCAGCAGCTTGGCGTCCGTCTTGCCTGCCACGAACCAGAGCAGCTCCT 6127711 Query 146222 CGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGCCCCGCAGGG 146281 || ||||| | ||||||| | ||||||||||||||| ||||| | | |||| | Sbjct 6127710 CGGCCACCCCGCGAAAGAAGACGCGCTTGGTGGTCAGCAGCGGGAAGGAGTCGCGCATGT 6127651 Query 146282 AGTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCCCCCCTGC 146341 | | |||| ||||| | |||||| || ||||| ||| | ||| || | Sbjct 6127650 TGAAGCGCATCTGGCTGCCGAACAGGGACAGCGTTCCCACCTGCGTGCGATCCATCCGAC 6127591 Query 146342 GCACCCCGTTCGCCAGGATCTCCCTGACGGTGTTGAGGTACTGGTGCTC 146390 || | || ||||| | ||| ||||| | || |||||||| | ||| Sbjct 6127590 GCTCTCCATTCGCGATGATGTCCCTCAGAAGATTCAGGTACTGCTCCTC 6127542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590012776667200