Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4812 87.8 3e-12 seq3325 87.8 3e-12 >seq4812 Length=908733 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| || || ||||| || || ||||| || | || || || || ||||| Sbjct 620201 AAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTCTCATCTTCGCCGGAAAG 620142 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| |||| || || ||||| || ||||| || || || || |||||| Sbjct 620141 CAGCTTGAGGATGGTCGCACTTTGTCCGATTACAACATTCAGAAGGAGTCGACCTTGCAT 620082 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | ||| | || |||||||| Sbjct 620081 TTGGTTCTCCGTCTGCGTGGTGGTAT 620056 >seq3325 Length=21082 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | |||||||| || ||||| || || || | || |||| || Sbjct 20526 AATGCAGATCTTTGTCAAGACACTTACTGGCAAGACCATCACCTTGGAAGTTGAGCCATC 20585 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || || || || || || || || || || || ||||| Sbjct 20586 AGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCA 20645 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | || || || || |||||| | ||||| | || || | ||||| || Sbjct 20646 GCAGCGATTGATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGATTACAA 20705 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| ||||||||||||||| | ||| | || |||||||| Sbjct 20706 CATCCAGAAGGAATCGACTTTGCATTTGGTTCTCCGTCTGCGTGGTGGTAT 20756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755374033024000