Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq5978 93.3 9e-14 >seq5978 Length=4749261 Score = 93.3 bits (102), Expect = 9e-14 Identities = 195/285 (68%), Gaps = 13/285 (5%) Strand=Plus/Minus Query 254106 CTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACT 254165 |||||||||||||| || || || || || | | || || ||| ||||||||||| Sbjct 537520 CTCGAGCTGAACGCCTCCGATGAGCGGGGCATTAATGTGGTGCGCACCAAGATCAAGAAC 537461 Query 254166 TTCTCCAAGATGTCG------ATTTCGTCGTTCCAAC--CCGGC--TGTCCGCCTTTCAA 254215 ||||| || | ||| | | | ||| | | | ||| |||||||| || || Sbjct 537460 TTCTCGCAGCTCTCGGCCAGCAGTGTG-CGTCCGGATGGCAGGCCGTGTCCGCCCTTTAA 537402 Query 254216 GCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCG 254275 | || | |||||||||||||| ||| | ||||| | ||| ||||||||||| || || Sbjct 537401 GATCATCATCCTGGACGAGGCTGACTCGATGACCCATGCCGCCCAGTCCGCCCTGCGTCG 537342 Query 254276 AACGATGGAGACGCA-CTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGA 254334 || ||||||| | | ||| | || || || |||||| | |||||||| || || | Sbjct 537341 CACCATGGAGAAGGAGAGCCGGAG-CACCCGCTTCTGCCTGATTTGCAACTATGTCTCCA 537283 Query 254335 AGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 |||||| | || | | || || ||| | || || || |||| Sbjct 537282 GGATCATTGTGCCCATCACCTCGCGTTGCTCTAAATTCCGCTTCA 537238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073646983754240