Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 131 3e-25 seq4563 104 5e-17 >seq1 Length=22559587 Score = 131 bits (144), Expect = 3e-25 Identities = 258/374 (69%), Gaps = 12/374 (3%) Strand=Plus/Plus Query 94168 ACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTG 94227 |||||| |||||| ||||| || ||||| ||||| |||||| | || |||| | | Sbjct 20042482 ACAAACATGTTGAGGGCGATGGATGCCAAGTTGCAAACTGCAATCTCATCCGGAGCGGAA 20042541 Query 94228 TACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTA 94287 |||| || ||||| ||||||||||| | |||||||| |||||||||| | ||||| Sbjct 20042542 TACTCTACGATTTCTGTGCACAAATTGCTACACTTGATGGTGCCGACATTCTGCTGGTTG 20042601 Query 94288 GACTTTCTATTGATGGTATCCTTAAAGCACACATAAGGTGTTCCAGTTTCGATACGTGCA 94347 ||| || ||| || ||||||||| ||| || || |||||||||||| |||| Sbjct 20042602 CTCTTCCTGTTGCAGGCATCCTTAAACAACATGTAGGGGTTTCCAGTTTCGACCTGTGCT 20042661 Query 94348 GAATTAATTTGGTCGA--ATAATGCACGTGCCTTCACCACCTCT-TTACCTTTGCCTTCA 94404 | ||| ||| | | | | | ||||| | || ||| || | || || Sbjct 20042662 TCAATAA--TGGCAAACCACAGGGATTGAGCCTT-AACAGTTCTGTTGGCACGACCCTCT 20042718 Query 94405 GCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGG 94464 |||||||||||| |||||| | || || ||||| || ||| ||| |||||| Sbjct 20042719 TGCTCATATTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGCCCAGGG 20042778 Query 94465 CACTCGTGGGGGCACATCAGGGACCAATTCTTCCCA---GCCTTCACTCTCTCCATGAAG 94521 || | || |||||||| || |||||| ||| ||| |||| || | || ||| ||| Sbjct 20042779 CATTTATGTGGGCACATTAGCGACCAA-TCT--CCATTGGCCTCGACGCGCTTCATAAAG 20042835 Query 94522 AGATCAGATACCCA 94535 ||||| | || ||| Sbjct 20042836 AGATCGGGTATCCA 20042849 Score = 120 bits (132), Expect = 6e-22 Identities = 302/454 (67%), Gaps = 10/454 (2%) Strand=Plus/Plus Query 35403 TGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTT 35462 |||| || |||||||| ||||| |||||||||||||| || || || | | || Sbjct 6127846 TGGGCCCGGTATACGGCTTCCAGTGGCGTCATTTTGGGGCGGAGTACGGCAAATGCGACG 6127905 Query 35463 CCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA- 35521 |||||| | || ||||| || || || || | | | | ||||| | | |||| Sbjct 6127906 ACGATTACAACGGCAAGGGCATCGACCAGCTGCGCCAGGTGATCGAGACCATCA-AGAAT 6127964 Query 35522 AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATG 35581 ||||| || || | || || ||| ||||||||||||| |||| | | ||| Sbjct 6127965 AATCCTTCGGACAGGCGCATCATCATGTCGGCATGGAATCCACTGGACATACCAAAGATG 6128024 Query 35582 GCTCTTCCTCCATGCCACATGACTG-CTCAATTTTATGTGGCTAAT------GGAGAATT 35634 || ||||||||||||||| || ||| | || || || || | | || || | Sbjct 6128025 GCCCTTCCTCCATGCCAC-TGCCTGGCACAGTTCTACGTCTCAGAGACGCGCGGTGAGCT 6128083 Query 35635 GTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 || |||||| |||| ||| | |||| || | || |||||||||||||||| || || Sbjct 6128084 TTCCTGCCAGCTGTACCAGAGGAGCGCCGACATGGGCCTGGGCGTGCCCTTCAACATCGC 6128143 Query 35695 ATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTT 35754 || ||| | || || || || |||| ||| | || |||||| || || ||||| || Sbjct 6128144 CTCCTACGCCCTGCTCACCCACATGATCGCCCATGTGACGGGTCTGAAGCCCGGAGACTT 6128203 Query 35755 TATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAAAGAAGCA 35814 | | | ||| | || ||| | ||||| || | ||| | ||| | | ||| |||| Sbjct 6128204 TGTGCACACCATGGGCGACACGCACATCTACCTGAACCATGTGGAGCCGCTGAAGGAGCA 6128263 Query 35815 GTTGTGCCGCGTCCCTAGACCATTCCCTAAGTTG 35848 | || ||| || | || ||||||||| || Sbjct 6128264 GCTGGAGCGCACGCCGCGTCCCTTCCCTAAGCTG 6128297 >seq4563 Length=14502029 Score = 104 bits (114), Expect = 5e-17 Identities = 300/459 (65%), Gaps = 7/459 (2%) Strand=Plus/Plus Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960 |||| | ||| | || ||||||| ||||| || || || |||||||| || || | Sbjct 3739433 ATTTCGGGGAGCGCATCATTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCAGCT 3739492 Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020 | || |||||||||||| | ||||| | ||| | |||| || || |||| |||||| | Sbjct 3739493 TTGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCCAACG 3739552 Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGG 102080 || | || || | ||||| || | ||| |||||||||| | ||||| || || Sbjct 3739553 AGCTTATCTCCCGCGACGAGGGCTTGCATTGCGACTTTGC---CGTGCTGATGTTCCAGC 3739609 Query 102081 GTTT--TGTTGATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCG 102138 || || | |||| | | || | || | || || || || || || Sbjct 3739610 ACTTGGTGCAGCGACCCAGGC--GCGAGCGCATCATCGAGATCATCCGCGATGCGGTGGC 3739667 Query 102139 AATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAA 102198 ||||| || || || | || | | || |||| || || | | || ||||||||| | Sbjct 3739668 CATTGAGCAGGAGTTCTTAACCGATGCCTTGCCCGTAAACCTCATCGGCATGAACTGCGA 3739727 Query 102199 GTTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGA 102258 | ||| |||||||||||||| ||||| || ||| |||| || || | | | Sbjct 3739728 TCTTATGTCGCAGTACATTGAATTCGTGGCGGACCGACTGCTGGTGGAGTTGAGCGTTGG 3739787 Query 102259 AAAGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAA 102318 || ||| ||| | |||||||| |||||||| | || || || || || Sbjct 3739788 CAAAATCTACAATACCAAGAACCCCTTTAACTTCATGGAGATGATCTCGCTGGACGGAAA 3739847 Query 102319 GACCAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAACG 102357 ||| ||||| ||||| |||| || | |||||| || || Sbjct 3739848 GACGAACTTCTTTGAGAAGAAGGTGGGCGAGTACCAGCG 3739886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989473945889400