Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 363 2e-95 seq4563 152 6e-32 >seq1 Length=22559587 Score = 363 bits (402), Expect = 2e-95 Identities = 1212/1876 (65%), Gaps = 30/1876 (2%) Strand=Plus/Plus Query 62033 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGT---TTCGTACGTAGATAGTA 62089 || |||||| | ||||| ||||| |||| ||| | | || || || || || || Sbjct 20041581 ATTCTTGTCTACAGTGAACTGAAT---AGCGTTTGCAGCTGGCTTTGTGCGCAGGTAATA 20041637 Query 62090 CATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATA 62149 |||||| ||||||||||| |||| ||||| || || || ||||| || Sbjct 20041638 CATTCCAGTTTTTAGACCAGCTTTCCAGGAATAAAAGTGTATGGAAGTAAGTTTTCCGTA 20041697 Query 62150 ACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTC 62209 | || ||||| | ||| || || | || ||||| ||||| || || || || | || Sbjct 20041698 GTTTGGCTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATAAACGCACCTCGATC 20041757 Query 62210 TGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCT 62268 ||| ||||| || || | | |||| || |||||||| | |||||| || | |||| Sbjct 20041758 TGCGGCCATCTTAATAGTGGACTTTACTGAGATTTCCCACACAGTTTTGTACAGATCGCG 20041817 Query 62269 TAATATCTTCTGGAAGGTTTG--TATTCTGAATGGATCCACCATCTACCA-TAATCCTAT 62325 | ||| ||| || | |||| || || || || || || | | || | Sbjct 20041818 AACCTTCTGGGGGATGGCCTCAATATTTTGGATTGAGCC-CCTGCTGGAAATGATTTGGT 20041876 Query 62326 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAA 62385 |||| || || || | ||| || | ||| |||| | || | | ||| |||||| Sbjct 20041877 TCTTCATATCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAA 20041936 Query 62386 CTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62445 | ||||||||||||||||||| |||| || || |||||||| | || || || || | Sbjct 20041937 CCACTTGGAATTCTCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTAAGGCTCGA 20041996 Query 62446 CCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 62505 || || || || |||| |||||||||||| || ||||| |||||||| || ||||| | Sbjct 20041997 ATGATTCGTTGTTACCCATAATTTGAGCAGTAGAAGCAGTGGGCATAGGAGCAACCAACA 20042056 Query 62506 AACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGAT 62565 || | | ||||| | |||| || || || | | ||| | |||||| | Sbjct 20042057 GGGAGTTCCGGACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGT 20042116 Query 62566 CCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTA 62625 || || | || || ||||| || || || || ||| Sbjct 20042117 TCGTTGGCTCTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCACGGGGCTTCCCT 20042176 Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| ||||| ||| || |||| |||||| || || || || |||| Sbjct 20042177 CATAGGTTTCATATGGACCTTCGATCTGGGCCAGTTCACAACTGGCTTCCAAAGCGCCGT 20042236 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTA-GATCTTGTGCTTCCGGGCTATCAAATGGA 62744 | || || ||||| || |||| || ||| | || | ||||| || ||| | || Sbjct 20042237 AGTAGATAGTTTCGAAAATCTGCTGATTCAAGAGGCCG-GCTTCATCACTTTCATAGGGG 20042295 Query 62745 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62804 | | |||||| || ||||| || ||||| || ||||| || || | || | ||| Sbjct 20042296 AACCGCATGAGAATCAAGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGATGC 20042355 Query 62805 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62864 ||| ||| || | | || ||||| | || || | |||||||| || || || || Sbjct 20042356 CTCAAATTGGATTTCTTGGCCTCTGGCAGGGGGTAGAAGTTAATATCGATTATCTTGTTA 20042415 Query 62865 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT 62924 ||||| || || ||| || ||||| ||||| ||||| || | || Sbjct 20042416 AGATTCTTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTTGAAATCGTATGTCTTCTCG 20042475 Query 62925 A---TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCA 62981 | ||||||||||| | || | ||||||| || || || || | ||||| | | Sbjct 20042476 GGAGTGACAAACATGTTGAGGGCGATGGATGCCAAGTTGCAAACTGCAATCTCATCCGGA 20042535 Query 62982 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGT 63041 | | ||| | || || || ||||| | ||| ||||||||||| || || | ||| || Sbjct 20042536 GCGGAATACTCTACGATTTCTGTGCACAAATTGCTACACTTGATGGTGCCGACATTCTGC 20042595 Query 63042 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63101 || || ||||| |||| || ||||||||| | | ||| | || | |||||||| | | Sbjct 20042596 TGGTTGCTCTTCCTGTTGCAGGCATCCTTAAACAACATGTAGGGGTTTCCAGTTTCGACC 20042655 Query 63102 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT-CTCCT 63160 || | ||| ||||| || ||| | | | ||||||| | || | ||| | | Sbjct 20042656 TGTGCTTCAATAATGGCAAACCACAGGGATTGAGCCTTAAC---AGTTCTGTTGGCACGA 20042712 Query 63161 TTCTCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63218 ||||| || ||| |||||| |||||| || || ||||| |||| || | Sbjct 20042713 CCCTCTTGCTCATATTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGC 20042772 Query 63219 CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63278 | ||| |||| || || ||||| | |||||| ||||| | ||| || || |||||| Sbjct 20042773 CCAGGGCATTTATGTGGGCACATTAGCGACCAATCTCCATTGGCCTCGACGCGCTTCATA 20042832 Query 63279 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338 |||||||| || ||||| || || ||| ||||| | | | || |||||| || || Sbjct 20042833 AAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGGGCCCGATTTTCCTCCTTGCCG 20042892 Query 63339 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398 || || || ||||| || |||||| | | | ||| || ||||| || |||| ||| ||| Sbjct 20042893 GTGTTTTTCTTAAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATG 20042952 Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458 || | | || || || ||| ||||| ||||| | || | || || || | Sbjct 20042953 GCAAAGGCACCGGGACGCTTGCCACCTCCTTGATCCACATAACGCGCCACATTGTTGAAG 20043012 Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCA 63518 || |||||||| |||| | || || ||| | ||||| || ||| | || || || Sbjct 20043013 ACCCTCAACATGGGAACCAAGCCATTGGATGTGCCATTCGTTCCGCAAATCGAGGTGCCC 20043072 Query 63519 CTGGCACGAATATTACTAATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 | || || || ||| || || || || || || ||| ||| ||||| || Sbjct 20043073 TTTGCCCGGAT----GCAATGGACGTTAAGTCCAATGCCGCCGGCCGATTTCGAGATCAA 20043128 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634 || || ||| | | | | | ||||| || || || | ||||| | | || Sbjct 20043129 GGCACACTGTTCCACGGACTTAAAAATGCCCTCGATAGAGTCGGCCGTCATGGTCAAGAG 20043188 Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694 || || |||| || | ||| | || | || ||| | || || || || || Sbjct 20043189 GAAGCAAGACGACAGCTGCGGGCGATTTGTGGCAGCGGCAAAAAGTGTTGGCGACGCATG 20043248 Query 63695 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63754 ||| || || || || | ||||| || || || | || | ||||||||| Sbjct 20043249 CGTGAAGTATCGCTCCGACAAGAGATTATAAGTTTCCACGGCCGCATCTATATCCTCCCC 20043308 Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814 ||| ||||| | || || ||||| ||||| || || || | || ||||||| ||| Sbjct 20043309 ATGGATTCCGATCGCCACGCGCATCAACATATGTTGCGGACGCTCTGCAATTTTTCCGTT 20043368 Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874 | | |||| || ||||| ||| | || ||||| ||||| ||||| || |||||| Sbjct 20043369 TCTCTTCAGCAGATAGGAACGTTCTAGGGTCTTAAACCCAAAGTAGTTATACCCAAAGTC 20043428 Query 63875 TCGTTCGTAAATAATA 63890 || ||||| || ||| Sbjct 20043429 GCGGTCGTAGATTATA 20043444 >seq4563 Length=14502029 Score = 152 bits (168), Expect = 6e-32 Identities = 536/835 (64%), Gaps = 3/835 (0%) Strand=Plus/Minus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 |||||||| ||||| || ||||| || || || || || || ||||| |||| Sbjct 3739895 ACTCCCATGCGCTGGTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTCTTTCCGTCCAGC 3739836 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 || || | |||||||| | ||| || || | |||||| ||||| || | ||| Sbjct 3739835 GAGATCATCTCCATGAAGTTAAAGGGGTTCTTGGTATTGTAGATTTTGCCAACGCTCAAC 3739776 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 || | || || || || |||||||| || || ||| | || || ||||| Sbjct 3739775 TCCACCAGCAGTCGGTCCGCCACGAATTCAATGTACTGCGACATAAGATCGCAGTTCATG 3739716 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || ||||| || || || | || | || | || || || ||||||| ||||||| Sbjct 3739715 CCGATGAGGTTTACGGGCAAGGCATCGGTTAAGAACTCCTGCTCAATGGCCACCGCATCG 3739656 Query 33522 GTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAA 33581 || || | | | || || ||| | || | || || | ||||||| Sbjct 3739655 CGGATGATCTCGATGATGCGCTCGCGCCTGGGTCGCTGCACCAAGTGCTGGAACATCAGC 3739596 Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || ||||| |||| |||||||| | || | ||||| || || || ||| Sbjct 3739595 ACGGCAAAGTCGCAATGCAAGCCCTCGTCGCGGGAGATAAGCTCGTTGGAGAAGGTCAGT 3739536 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || ||||| || || ||| |||||| Sbjct 3739535 CCCGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAG 3739476 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTA- 33759 || || || || ||||| |||||||| | | ||| || || ||| | | | | | Sbjct 3739475 ATGCCCTCGACGGCAGCGAAGGCAATGATGCGCTCCCCGAAATTGGCCGATTTGGAGGAG 3739416 Query 33760 -TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||| | ||||| || ||||| || ||| ||||| || || ||||| || Sbjct 3739415 ATCCAGGAAAGGGCCCAGTCCGCCTTGCGCTTCACAGCCGGCATTGTCTCGATGGCGTTG 3739356 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || || |||| | || ||| | ||||| ||||||| | ||| |||||| Sbjct 3739355 AACAGGTAGTCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATT 3739296 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 ||||| || | ||| || ||||| || || || || ||||| || | |||||| || ||| Sbjct 3739295 TCCGAGTGCACGTTCTCCATGGCGATTTGGAAGCCATAGAAGCACCGAGCCTCCGTGATC 3739236 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 ||||| || || || || || | | || || ||||| || ||||| || ||| Sbjct 3739235 TGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTCACGATGCCATCGGATGCGGCA 3739176 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 34058 || || |||| || || || || | |||||| | || | ||| || Sbjct 3739175 AAGAAGGCCAGCACGTGCGAGATGAAGTGACGTTCGTCGTCCTTCAGGCGGTGCCAGTCG 3739116 Query 34059 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | | || || || | |||||| || ||||| ||||| || || ||||| |||| Sbjct 3739115 GTCAGGTCCTTGGACAGATCCACCTCCTCCACGGTCCAGAAAGAGGCCTCAGCCT 3739061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629749264790400