Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1 125 7e-24 >seq1 Length=22559587 Score = 125 bits (138), Expect = 7e-24 Identities = 534/838 (64%), Gaps = 7/838 (1%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||| | |||| |||| || | ||||| | || ||||||||||||||| Sbjct 20041588 TCTACAGTGAACTGAATAGCGTTTGCAGCTGGCTTTGTGCGCAGGTAATACATTCCAGTT 20041647 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| || | |||| ||||| || || || |||||| |||| | || | Sbjct 20041648 TTTAGACCAGCTTTCCAGGAATAAAAGTGTATGGAAGTAAGTTTTCCGTAGTTTGGCTCT 20041707 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || || | | || ||||| ||||||||||||||||||| || || ||||| Sbjct 20041708 GCCACATGAATGTTGAACGACTGACTCTGATCTATAAACGCACCTCGATCTGCGGCCATC 20041767 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | | | ||| || || ||||| || ||||| || | | | || | Sbjct 20041768 TTAATAGTGGACTTTACTGAGATTTCCCACACAGTTTTGTACAGATCGCGAACCTTCTGG 20041827 Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTA-TGTAACACAATTGTATTCTTTATGTC 37085 || | || | || ||| || || || | || || | ||| ||||| || || Sbjct 20041828 GGGATGGCCTCAATATTTTGGATTGAGCCCCTGCTGGAAATGATTTGG-TTCTTCATATC 20041886 Query 37086 ATTATTCCACATATTTCTACTTA-TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 | | ||||| | | | || |||| || || || | || | || || || || | Sbjct 20041887 GTCGTCCCACA-AGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCACTTGGA 20041945 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | |||||||| | |||| || ||||| ||||| | || || || || | || || | Sbjct 20041946 ATTCTCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTAAGGCTCGAATGATTCGT 20042005 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 | |||| | ||||||| ||||| ||||| ||||| || || | | ||| || | Sbjct 20042006 TGTTACCCATAATTTGAGCAGTAGAAGCAGTGGGCATAGGAGCAACCAACAGGGAGTTCC 20042065 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 | || || | || || || || |||| | ||| ||||| | | ||||| | Sbjct 20042066 GGACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTCGTTGGCT 20042125 Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 || |||||| || || || ||||| ||||| ||| | || | | ||| || | Sbjct 20042126 CTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCACGGGGCTTCCCTCATAGGTTT 20042185 Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTG 37444 |||| || || | || | || ||||| ||||| | ||| | ||| | || || || | Sbjct 20042186 CATATGGACCTTCGATCTGGGCCAGTTCACAACTGGCTTCCAAAGCGCCGTAGTAGATAG 20042245 Query 37445 TTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATA 37504 |||||||||| || ||| || | ||||| || || || | | | | || | Sbjct 20042246 TTTCGAAAATCTGCTGATTCAAGAGGCCGGCTTCATCACTTTCATAGGGGAACCGCATGA 20042305 Query 37505 ATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAG 37564 || || | ||||| || ||||| |||||||| || | ||| | ||| || ||| | Sbjct 20042306 GAATCAAGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGATGCCTCAAATTGG 20042365 Query 37565 ATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTT 37622 || | | ||| || || || | || ||||| ||||| || || ||||| || Sbjct 20042366 ATTTCTTGGCCTCTGGCAGGGGGTAGAAGTTAATATCGATTATCTTGTTAAGATTCTT 20042423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468473965059200