Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 396 3e-105 >seq1 Length=22559587 Score = 396 bits (438), Expect = 3e-105 Identities = 1223/1884 (65%), Gaps = 30/1884 (2%) Strand=Plus/Plus Query 64826 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGT---TTCGTACGTAGATAGTA 64882 || |||||| | ||||| ||||| |||| ||| | | || || || || || || Sbjct 20041581 ATTCTTGTCTACAGTGAACTGAAT---AGCGTTTGCAGCTGGCTTTGTGCGCAGGTAATA 20041637 Query 64883 CATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATA 64942 |||||| ||||||||||| |||| ||||| || || || ||||| || Sbjct 20041638 CATTCCAGTTTTTAGACCAGCTTTCCAGGAATAAAAGTGTATGGAAGTAAGTTTTCCGTA 20041697 Query 64943 ACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTC 65002 | || ||||| | ||| || || | || ||||| ||||| || || || || | || Sbjct 20041698 GTTTGGCTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATAAACGCACCTCGATC 20041757 Query 65003 TGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCT 65061 ||| ||||| || || | | |||| || |||||||| | |||||| || | |||| Sbjct 20041758 TGCGGCCATCTTAATAGTGGACTTTACTGAGATTTCCCACACAGTTTTGTACAGATCGCG 20041817 Query 65062 TAATATCTTCTGGAAGGTTTG--TATTCTGAATGGATCCACCATCTGCCA-TAATCCTAT 65118 | ||| ||| || | |||| || || || || || ||| | | || | Sbjct 20041818 AACCTTCTGGGGGATGGCCTCAATATTTTGGATTGAGCC-CCTGCTGGAAATGATTTGGT 20041876 Query 65119 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 65178 |||| || || || | ||| || | ||| |||| | || | | ||| | |||| Sbjct 20041877 TCTTCATATCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAA 20041936 Query 65179 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 65238 | ||||| ||||||||||||| |||| || || |||||||| | || || || || | Sbjct 20041937 CCACTTGGAATTCTCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTAAGGCTCGA 20041996 Query 65239 CAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 65298 || || || || |||| |||||||||||| || ||||| |||||||| || ||||| | Sbjct 20041997 ATGATTCGTTGTTACCCATAATTTGAGCAGTAGAAGCAGTGGGCATAGGAGCAACCAACA 20042056 Query 65299 AACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGAT 65358 || | | ||||| | |||| || || || | ||| | |||||| | Sbjct 20042057 GGGAGTTCCGGACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGT 20042116 Query 65359 CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTA 65418 || || | || ||||| || || || || ||| Sbjct 20042117 TCGTTGGCTCTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCACGGGGCTTCCCT 20042176 Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| ||||| ||| || ||||||||||| || || || || |||| Sbjct 20042177 CATAGGTTTCATATGGACCTTCGATCTGGGCCAGTTCACAACTGGCTTCCAAAGCGCCGT 20042236 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATGGA 65537 | || || |||||||| |||| || ||| | || | ||||| || ||| | || Sbjct 20042237 AGTAGATAGTTTCGAAAATCTGCTGATTCAAGAGGCCG-GCTTCATCACTTTCATAGGGG 20042295 Query 65538 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 65597 | | |||||| || ||||| || ||||| || ||||| || || | || | ||| Sbjct 20042296 AACCGCATGAGAATCAAGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGATGC 20042355 Query 65598 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 65657 ||| ||| || | | || ||||| | || || | |||||||| || || || || Sbjct 20042356 CTCAAATTGGATTTCTTGGCCTCTGGCAGGGGGTAGAAGTTAATATCGATTATCTTGTTA 20042415 Query 65658 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCT 65717 ||||| || || ||| || ||||| ||||| ||||| || || || Sbjct 20042416 AGATTCTTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTTGAAATCGTATGTCTTCTCG 20042475 Query 65718 A---TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 65774 | ||||||||||| | || | ||||||| || ||||| || | ||||| | | Sbjct 20042476 GGAGTGACAAACATGTTGAGGGCGATGGATGCCAAGTTGCAAACTGCAATCTCATCCGGA 20042535 Query 65775 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 65834 | | ||| | || || || ||||| | ||| |||||||||||||| || | ||| || Sbjct 20042536 GCGGAATACTCTACGATTTCTGTGCACAAATTGCTACACTTGATGGTGCCGACATTCTGC 20042595 Query 65835 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 65894 || || ||||| |||| || ||||||||| | | ||| | || | |||||||| | | Sbjct 20042596 TGGTTGCTCTTCCTGTTGCAGGCATCCTTAAACAACATGTAGGGGTTTCCAGTTTCGACC 20042655 Query 65895 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT-CTCTT 65953 || | ||| ||||| || ||| | | | ||||||| | || | ||| | | Sbjct 20042656 TGTGCTTCAATAATGGCAAACCACAGGGATTGAGCCTTAAC---AGTTCTGTTGGCACGA 20042712 Query 65954 TTCTCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 66011 ||||| | ||| | |||||| |||||| || || ||||| |||| || | Sbjct 20042713 CCCTCTTGCTCATATTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGC 20042772 Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| |||| || || ||||| | |||||| ||||| | ||| || || |||||| Sbjct 20042773 CCAGGGCATTTATGTGGGCACATTAGCGACCAATCTCCATTGGCCTCGACGCGCTTCATA 20042832 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 |||||||| || ||||| || || ||| | ||| | || | || |||||| || || Sbjct 20042833 AAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGGGCCCGATTTTCCTCCTTGCCG 20042892 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 || || || ||||| || |||||| | | | ||| | ||||| || |||| ||| ||| Sbjct 20042893 GTGTTTTTCTTAAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATG 20042952 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | || || || ||| ||||| ||||| | || | || || || | Sbjct 20042953 GCAAAGGCACCGGGACGCTTGCCACCTCCTTGATCCACATAACGCGCCACATTGTTGAAG 20043012 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 || |||||||| |||| | ||||||||||| ||||| || ||| | || || | || Sbjct 20043013 ACCCTCAACATGGGAACCAAGCCATTGGATGTGCCATTCGTTCCGCAAATCGAGGTGCCC 20043072 Query 66312 CTTGCACGAATATTACTAATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATTAA 66367 |||| || || ||| || || || || || || ||| ||| ||||| || Sbjct 20043073 TTTGCCCGGAT----GCAATGGACGTTAAGTCCAATGCCGCCGGCCGATTTCGAGATCAA 20043128 Query 66368 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 66427 || || ||| | | | | | |||||||| ||| || || ||||| | | || Sbjct 20043129 GGCACACTGTTCCACGGACTTAAAAATGCCCTCGATAGAGTCGGCCGTCATGGTCAAGAG 20043188 Query 66428 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 66487 || || |||| || | ||| | || | || ||| | || || || || || Sbjct 20043189 GAAGCAAGACGACAGCTGCGGGCGATTTGTGGCAGCGGCAAAAAGTGTTGGCGACGCATG 20043248 Query 66488 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 66547 ||| || || || || | ||||| || || || | || | ||||||||| Sbjct 20043249 CGTGAAGTATCGCTCCGACAAGAGATTATAAGTTTCCACGGCCGCATCTATATCCTCCCC 20043308 Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 66607 ||| ||||| | || || ||||| ||||| || || || | || | || || ||| Sbjct 20043309 ATGGATTCCGATCGCCACGCGCATCAACATATGTTGCGGACGCTCTGCAATTTTTCCGTT 20043368 Query 66608 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 66667 | | |||| || ||||| ||| | || ||||| ||||| ||||| || |||||| Sbjct 20043369 TCTCTTCAGCAGATAGGAACGTTCTAGGGTCTTAAACCCAAAGTAGTTATACCCAAAGTC 20043428 Query 66668 TCGTTCGTAAATAATAACCGAGTT 66691 || ||||| || ||| ||||| Sbjct 20043429 GCGGTCGTAGATTATAGAAGAGTT 20043452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658101388251200