Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1 232 6e-56 >seq1 Length=22559587 Score = 232 bits (256), Expect = 6e-56 Identities = 330/465 (71%), Gaps = 6/465 (1%) Strand=Plus/Minus Query 20889 GGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAA 20948 || || |||||||| || | | |||||| | ||| || || || ||||| ||| Sbjct 6128290 GGGAAGGGACGCGGCGTGCGCTCCAGCTGCTCCTTCAGCGGCTCCACATGGTTCAGGTAG 6128231 Query 20949 ACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCG 21008 | ||| | ||| |||| |||||||||||||||||| || |||| ||||| || || ||| Sbjct 6128230 ATGTGCGTGTCGCCCATGGTGTGCACAAAGTCTCCGGGCTTCAGACCCGTCACATGGGCG 6128171 Query 21009 ATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCG 21068 |||| | || || ||||||||| ||||||||| || || || || |||||||||||| Sbjct 6128170 ATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCG 6128111 Query 21069 GCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC------ACGTAAAACTGA 21122 ||| ||||||||||||||||||||| ||||| || || | | ||||| ||||| Sbjct 6128110 GCGCTCCTCTGGTACAGCTGGCAGGAAAGCTCACCGCGCGTCTCTGAGACGTAGAACTGT 6128051 Query 21123 CACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCAC 21182 || ||| || ||||| || |||||| | | |||| || ||||| || || Sbjct 6128050 GCCAGGCAGTGGCATGGAGGAAGGGCCATCTTTGGTATGTCCAGTGGATTCCATGCCGAC 6127991 Query 21183 ATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGG 21242 || | |||||||| || || | || || || | ||| | ||||||||| Sbjct 6127990 ATGATGATGCGCCTGTCCGAAGGATTATTCTTGATGGTCTCGATCACCTGGCGCAGCTGG 6127931 Query 21243 TCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTC 21302 || | |||| || | ||| | | ||||| | |||||||||||||||||| | | Sbjct 6127930 TCGATGCCCTTGCCGTTGTAATCGTCGTCGCATTTGCCGTACTCCGCCCCAAAATGACGC 6127871 Query 21303 CACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCC 21347 |||||||| ||||| ||||| ||||| ||||| || ||| ||| Sbjct 6127870 CACTGGAAGCCGTATACCGGGCCCAGGTCGCCGACGGCGCGCTCC 6127826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427730746646400